-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_967450-1143653

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.69869_t
Valid prediction for snap_scaffold_17-snap.187-T1
Couldn't classify 131772, 131831
Sorry, prediction pasa_asmbl_17716.p1 fails validation.
(AAG)	 TG	131772-131831	GT	ATG
(ATG)	 AG	132412-132573	GT	AGG
(GTG)	 AG	132851-133309	TC	GAT
-recovered pasa_asmbl_17716.p1, initial, 132412, 132573
-recovered pasa_asmbl_17716.p1, terminal, 132851, 133309
-recovered pasa_asmbl_17716.p1, internal, 132412, 132573
Couldn't classify 112472, 112518
Sorry, prediction pasa_asmbl_17713.p1 fails validation.
(AGC)	 CC	112472-112518	GT	AGG
(GCG)	 AG	112769-112873	GT	AGG
(GCG)	 AG	112937-113060	GT	AGG
(TCT)	 AG	113305-113418	GT	AGG
(GTG)	 AG	113685-113836	GT	AGG
(ACA)	 AG	114041-114173	GT	ATG
(GTG)	 AG	114543-114663	GT	AGG
(GTT)	 AG	114869-115050	AC	GAA
-recovered pasa_asmbl_17713.p1, terminal, 114869, 115050
-recovered pasa_asmbl_17713.p1, internal, 112769, 112873
-recovered pasa_asmbl_17713.p1, internal, 112937, 113060
-recovered pasa_asmbl_17713.p1, internal, 113305, 113418
-recovered pasa_asmbl_17713.p1, internal, 113685, 113836
-recovered pasa_asmbl_17713.p1, internal, 114041, 114173
-recovered pasa_asmbl_17713.p1, internal, 114543, 114663
Valid prediction for GeneMark_model.69852_t
Couldn't classify 168957, 169358
Sorry, prediction pasa_asmbl_18720.p1 fails validation.
(CCC)	 GC	168957-169358	CG	GAC
Valid prediction for GlimmerHMM_glimmerT_40585-T1
Valid prediction for GlimmerHMM_glimmerT_40571-T1
Valid prediction for GlimmerHMM_glimmerT_40578-T1
Valid prediction for snap_scaffold_17-snap.188-T1
Valid prediction for snap_scaffold_17-snap.212-T1
Valid prediction for GeneMark_model.69840_t
Valid prediction for snap_scaffold_17-snap.208-T1
Valid prediction for Augustus_model.g27178.t1
Valid prediction for Augustus_model.g27184.t1
Valid prediction for snap_scaffold_17-snap.199-T1
Valid prediction for snap_scaffold_17-snap.194-T1
Valid prediction for snap_scaffold_17-snap.205-T1
Valid prediction for Augustus_model.g27174.t1
Valid prediction for snap_scaffold_17-snap.204-T1
Valid prediction for GlimmerHMM_glimmerT_40584-T1
Valid prediction for Augustus_model.g27182.t1
Valid prediction for snap_scaffold_17-snap.196-T1
Valid prediction for pasa_asmbl_17718.p1
Valid prediction for GlimmerHMM_glimmerT_40588-T1
Valid prediction for GeneMark_model.69844_t
Couldn't classify 35918, 36019
Sorry, prediction pasa_asmbl_17710.p1 fails validation.
(ATT)	 CG	35918-36019	GT	AGG
(GTG)	 AG	36685-36957	GT	GGG
(CTA)	 AG	37219-37413	GT	AGG
(TTC)	 AG	37703-37921	GT	AGG
(GTG)	 AG	38049-38320	GT	TGG
(GAC)	 AG	38746-38920	GG	GAG
-recovered pasa_asmbl_17710.p1, terminal, 38746, 38920
-recovered pasa_asmbl_17710.p1, internal, 36685, 36957
-recovered pasa_asmbl_17710.p1, internal, 37219, 37413
-recovered pasa_asmbl_17710.p1, internal, 37703, 37921
-recovered pasa_asmbl_17710.p1, internal, 38049, 38320
Valid prediction for HiQ_model.g27177.t1
Valid prediction for snap_scaffold_17-snap.214-T1
Valid prediction for snap_scaffold_17-snap.203-T1
Valid prediction for GeneMark_model.69850_t
Valid prediction for HiQ_model.g27192.t1
Valid prediction for snap_scaffold_17-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_40567-T1
Valid prediction for snap_scaffold_17-snap.213-T1
Valid prediction for GeneMark_model.69842_t
Valid prediction for snap_scaffold_17-snap.189-T1
Valid prediction for GeneMark_model.69857_t
Valid prediction for GeneMark_model.69870_t
Valid prediction for GlimmerHMM_glimmerT_40592-T1
Valid prediction for Augustus_model.g27193.t1
Valid prediction for GeneMark_model.69861_t
Valid prediction for GeneMark_model.69866_t
Valid prediction for snap_scaffold_17-snap.207-T1
Couldn't classify 107379, 107741
Sorry, prediction pasa_asmbl_17712.p1 fails validation.
(TCC)	 AG	107379-107741	GG	AGG
Valid prediction for GlimmerHMM_glimmerT_40590-T1
Valid prediction for Augustus_model.g27189.t1
Valid prediction for snap_scaffold_17-snap.202-T1
Valid prediction for GeneMark_model.69855_t
Valid prediction for GeneMark_model.69863_t
Valid prediction for GlimmerHMM_glimmerT_40586-T1
Couldn't classify 130941, 131001
Sorry, prediction pasa_asmbl_17714.p1 fails validation.
(ATG)	 CC	129281-129319	GT	GCG
(ACC)	 AG	130484-130689	GT	AGG
(GGC)	 AG	130941-131001	AC	GGA
-recovered pasa_asmbl_17714.p1, initial, 129281, 129319
-recovered pasa_asmbl_17714.p1, internal, 130484, 130689
Valid prediction for GeneMark_model.69876_t
Valid prediction for Augustus_model.g27188.t1
Valid prediction for snap_scaffold_17-snap.218-T1
Valid prediction for GlimmerHMM_glimmerT_40582-T1
Valid prediction for snap_scaffold_17-snap.215-T1
Valid prediction for GeneMark_model.69836_t
Valid prediction for Augustus_model.g27185.t1
Valid prediction for GeneMark_model.69872_t
Valid prediction for GeneMark_model.69874_t
Valid prediction for Augustus_model.g27186.t1
Valid prediction for GeneMark_model.69859_t
Valid prediction for GlimmerHMM_glimmerT_40572-T1
Valid prediction for GeneMark_model.69868_t
Valid prediction for Augustus_model.g27191.t1
Valid prediction for snap_scaffold_17-snap.192-T1
Valid prediction for GlimmerHMM_glimmerT_40580-T1
Valid prediction for snap_scaffold_17-snap.210-T1
Valid prediction for GeneMark_model.69848_t
Valid prediction for GlimmerHMM_glimmerT_40564-T1
Valid prediction for GlimmerHMM_glimmerT_40591-T1
Valid prediction for Augustus_model.g27171.t1
Valid prediction for CodingQuarry_transcript_21799-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.206-T1
Valid prediction for GeneMark_model.69853_t
Valid prediction for GlimmerHMM_glimmerT_40594-T1
Valid prediction for GlimmerHMM_glimmerT_40577-T1
Valid prediction for Augustus_model.g27194.t1
Valid prediction for GlimmerHMM_glimmerT_40573-T1
Valid prediction for GeneMark_model.69854_t
Couldn't classify 154163, 154408
Sorry, prediction pasa_asmbl_18701.p1 fails validation.
(CCA)	 AT	154163-154408	GT	AGG
(AGT)	 AG	155046-155129	GT	AGG
(TTG)	 AG	155228-155417	GT	AAG
(TGT)	 AG	155567-155736	CC	GAC
-recovered pasa_asmbl_18701.p1, terminal, 155567, 155736
-recovered pasa_asmbl_18701.p1, internal, 155046, 155129
-recovered pasa_asmbl_18701.p1, internal, 155228, 155417
Valid prediction for Augustus_model.g27180.t1
Valid prediction for snap_scaffold_17-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_40579-T1
Couldn't classify 56811, 56936
Sorry, prediction CodingQuarry_transcript_21795-T1 fails validation.
(ATG)	 GG	53441-54220	GT	AGG
(GCA)	 AG	54796-54853	GT	AGG
(GAG)	 AG	55177-55241	GT	AGG
(AAC)	 AG	55599-55757	GT	AGG
(AGT)	 AG	55906-56008	GT	AGG
(GGC)	 AG	56144-56286	GT	AGG
(GGT)	 AG	56353-56547	GT	AGG
(GAC)	 AG	56811-56936	CA	AGC
(GGC)	 AG	56970-56996	GT	AGG
(GTC)	 AG	57103-57177	AC	AGA
-recovered CodingQuarry_transcript_21795-T1, initial, 53441, 54220
add_exon() Sorry, CodingQuarry_transcript_21795-T1 54796-54853-terminal-3 is invalid.
-recovered CodingQuarry_transcript_21795-T1, terminal, 54796, 54853
-recovered CodingQuarry_transcript_21795-T1, terminal, 57103, 57177
-recovered CodingQuarry_transcript_21795-T1, internal, 54796, 54853
-recovered CodingQuarry_transcript_21795-T1, internal, 55177, 55241
-recovered CodingQuarry_transcript_21795-T1, internal, 55599, 55757
-recovered CodingQuarry_transcript_21795-T1, internal, 55906, 56008
-recovered CodingQuarry_transcript_21795-T1, internal, 56144, 56286
-recovered CodingQuarry_transcript_21795-T1, internal, 56353, 56547
-recovered CodingQuarry_transcript_21795-T1, internal, 56970, 56996
Valid prediction for GeneMark_model.69837_t
Valid prediction for GeneMark_model.69841_t
Valid prediction for GeneMark_model.69864_t
Valid prediction for GlimmerHMM_glimmerT_40581-T1
Valid prediction for GeneMark_model.69867_t
Valid prediction for snap_scaffold_17-snap.217-T1
Valid prediction for GeneMark_model.69839_t
Valid prediction for GeneMark_model.69873_t
Couldn't classify 149125, 149156
Couldn't classify 153596, 153685
Sorry, prediction pasa_asmbl_18703.p1 fails validation.
(CTG)	 AT	149125-149156	GT	AGG
(GAG)	 AG	150705-150773	GT	AGG
(GAC)	 AG	151218-151306	GT	AAG
(TGT)	 AG	151756-151829	GT	AGG
(TCG)	 AG	152003-152046	GT	AAG
(GAT)	 AG	152210-152454	GT	AGG
(GTC)	 AG	152650-153092	GT	AGG
(GGA)	 AG	153596-153685	GG	AGG
-recovered pasa_asmbl_18703.p1, internal, 150705, 150773
-recovered pasa_asmbl_18703.p1, internal, 151218, 151306
-recovered pasa_asmbl_18703.p1, internal, 151756, 151829
-recovered pasa_asmbl_18703.p1, internal, 152003, 152046
-recovered pasa_asmbl_18703.p1, internal, 152210, 152454
-recovered pasa_asmbl_18703.p1, internal, 152650, 153092
Valid prediction for GlimmerHMM_glimmerT_40574-T1
Valid prediction for GeneMark_model.69843_t
Valid prediction for CodingQuarry_transcript_21794-T1
Valid prediction for snap_scaffold_17-snap.195-T1
Valid prediction for Augustus_model.g27181.t1
Valid prediction for CodingQuarry_transcript_21797-T1
Valid prediction for Augustus_model.g27176.t1
Valid prediction for snap_scaffold_17-snap.211-T1
Couldn't classify 86813, 86976
Sorry, prediction pasa_asmbl_18712.p1 fails validation.
(ACA)	 AT	86813-86976	GT	CTG
(GAA)	 AG	87506-87712	GT	GTG
(AAT)	 AG	88005-88151	GT	AGG
(CTT)	 AG	88383-88464	GT	AGG
(CCC)	 AG	88740-88910	CG	GAC
-recovered pasa_asmbl_18712.p1, terminal, 88740, 88910
-recovered pasa_asmbl_18712.p1, internal, 87506, 87712
-recovered pasa_asmbl_18712.p1, internal, 88005, 88151
-recovered pasa_asmbl_18712.p1, internal, 88383, 88464
Valid prediction for snap_scaffold_17-snap.190-T1
Couldn't classify 108670, 108738
Sorry, prediction pasa_asmbl_18709.p1 fails validation.
(ATG)	 AG	107596-107688	GT	CGG
(ACC)	 AG	107845-107979	GT	AGG
(GAG)	 AG	108103-108163	GT	CTG
(ACT)	 AG	108304-108383	GT	AGG
(GAG)	 AG	108670-108738	GT	GGG
-recovered pasa_asmbl_18709.p1, initial, 107596, 107688
-recovered pasa_asmbl_18709.p1, internal, 107596, 107688
-recovered pasa_asmbl_18709.p1, internal, 107845, 107979
-recovered pasa_asmbl_18709.p1, internal, 108103, 108163
-recovered pasa_asmbl_18709.p1, internal, 108304, 108383
-recovered pasa_asmbl_18709.p1, internal, 108670, 108738
Couldn't classify 162427, 162732
Sorry, prediction pasa_asmbl_17709.p1 fails validation.
(ATG)	 AG	162427-162732	GA	CCG
Valid prediction for GlimmerHMM_glimmerT_40587-T1
Valid prediction for CodingQuarry_transcript_21796-T1
Valid prediction for snap_scaffold_17-snap.193-T1
Valid prediction for GeneMark_model.69835_t
Valid prediction for GlimmerHMM_glimmerT_40569-T1
Couldn't classify 110807, 110920
Couldn't classify 112830, 112959
Sorry, prediction pasa_asmbl_18707.p1 fails validation.
(AAC)	 AG	110807-110920	GT	AGG
(GCA)	 AG	111252-111419	GT	AGG
(AAC)	 AG	111695-111853	GT	GGG
(ATG)	 AG	112033-112140	GT	AGG
(GGA)	 AG	112533-112654	GT	AGG
(GCC)	 AG	112830-112959	AG	AGA
-recovered pasa_asmbl_18707.p1, initial, 112033, 112140
-recovered pasa_asmbl_18707.p1, internal, 110807, 110920
-recovered pasa_asmbl_18707.p1, internal, 111252, 111419
-recovered pasa_asmbl_18707.p1, internal, 111695, 111853
-recovered pasa_asmbl_18707.p1, internal, 112033, 112140
-recovered pasa_asmbl_18707.p1, internal, 112533, 112654
Valid prediction for GeneMark_model.69849_t
Valid prediction for pasa_asmbl_18716.p1
Valid prediction for Augustus_model.g27172.t1
Valid prediction for GeneMark_model.69860_t
Valid prediction for Augustus_model.g27195.t1
Couldn't classify 153750, 154103
Sorry, prediction pasa_asmbl_18702.p1 fails validation.
(AGC)	 GG	153750-154103	AC	GCA
Valid prediction for snap_scaffold_17-snap.216-T1
Valid prediction for snap_scaffold_17-snap.201-T1
Valid prediction for Augustus_model.g27173.t1
Valid prediction for GlimmerHMM_glimmerT_40566-T1
Valid prediction for GlimmerHMM_glimmerT_40576-T1
Valid prediction for GeneMark_model.69875_t
Valid prediction for snap_scaffold_17-snap.197-T1
Valid prediction for GeneMark_model.69877_t
Valid prediction for GlimmerHMM_glimmerT_40583-T1
Valid prediction for GlimmerHMM_glimmerT_40575-T1
Valid prediction for GlimmerHMM_glimmerT_40570-T1
Valid prediction for GlimmerHMM_glimmerT_40568-T1
Valid prediction for GeneMark_model.69858_t
Valid prediction for Augustus_model.g27175.t1
Valid prediction for GeneMark_model.69847_t
Valid prediction for snap_scaffold_17-snap.198-T1
Valid prediction for GeneMark_model.69845_t
Couldn't classify 161057, 161155
Sorry, prediction GlimmerHMM_glimmerT_40565-T1 fails validation.
(ATG)	 CT	159983-160076	GT	CGG
(CTG)	 AG	160091-160272	GT	GGG
(GAA)	 AG	160531-160767	GT	ATG
(GCC)	 AG	161057-161155	NN	ANN
-recovered GlimmerHMM_glimmerT_40565-T1, initial, 159983, 160076
-recovered GlimmerHMM_glimmerT_40565-T1, internal, 160091, 160272
-recovered GlimmerHMM_glimmerT_40565-T1, internal, 160531, 160767
Valid prediction for Augustus_model.g27183.t1
Valid prediction for GeneMark_model.69851_t
Valid prediction for GeneMark_model.69865_t
Valid prediction for snap_scaffold_17-snap.200-T1
Valid prediction for Augustus_model.g27179.t1
Valid prediction for GlimmerHMM_glimmerT_40593-T1
Valid prediction for GeneMark_model.69846_t
Valid prediction for HiQ_model.g27187.t1
Valid prediction for snap_scaffold_17-snap.191-T1
Valid prediction for GeneMark_model.69856_t
Valid prediction for HiQ_model.g27190.t1
Valid prediction for snap_scaffold_17-snap.219-T1
Valid prediction for GlimmerHMM_glimmerT_40589-T1
Valid prediction for GeneMark_model.69862_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47887, rend_intergenic: 44003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58454, rend_intergenic: 50972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85766, rend_intergenic: 79415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122764, rend_intergenic: 118343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149462, rend_intergenic: 143246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160276, rend_intergenic: 157308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165970, rend_intergenic: 163245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173495, rend_intergenic: 169575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176204
-exon list size: 675


building trellis

0.1    
0.3    
0.4    
0.6    
0.7    
0.9    
1.0    
1.2    
1.3    
1.5    
1.6    
1.8    
1.9    
2.1    
2.2    
2.4    
2.5    
2.7    
2.8    
3.0    
3.1    
3.2    
3.4    
3.5    
3.7    
3.8    
4.0    
4.1    
4.3    
4.4    
4.6    
4.7    
4.9    
5.0    
5.2    
5.3    
5.5    
5.6    
5.8    
5.9    
6.1    
6.2    
6.4    
6.5    
6.6    
6.8    
6.9    
7.1    
7.2    
7.4    
7.5    
7.7    
7.8    
8.0    
8.1    
8.3    
8.4    
8.6    
8.7    
8.9    
9.0    
9.2    
9.3    
9.5    
9.6    
9.7    
9.9    
10.0    
10.2    
10.3    
10.5    
10.6    
10.8    
10.9    
11.1    
11.2    
11.4    
11.5    
11.7    
11.8    
12.0    
12.1    
12.3    
12.4    
12.6    
12.7    
12.9    
13.0    
13.1    
13.3    
13.4    
13.6    
13.7    
13.9    
14.0    
14.2    
14.3    
14.5    
14.6    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.8    
16.0    
16.1    
16.2    
16.4    
16.5    
16.7    
16.8    
17.0    
17.1    
17.3    
17.4    
17.6    
17.7    
17.9    
18.0    
18.2    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.2    
19.4    
19.5    
19.6    
19.8    
19.9    
20.1    
20.2    
20.4    
20.5    
20.7    
20.8    
21.0    
21.1    
21.3    
21.4    
21.6    
21.7    
21.9    
22.0    
22.2    
22.3    
22.5    
22.6    
22.7    
22.9    
23.0    
23.2    
23.3    
23.5    
23.6    
23.8    
23.9    
24.1    
24.2    
24.4    
24.5    
24.7    
24.8    
25.0    
25.1    
25.3    
25.4    
25.6    
25.7    
25.8    
26.0    
26.1    
26.3    
26.4    
26.6    
26.7    
26.9    
27.0    
27.2    
27.3    
27.5    
27.6    
27.8    
27.9    
28.1    
28.2    
28.4    
28.5    
28.7    
28.8    
29.0    
29.1    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.4    
30.6    
30.7    
30.9    
31.0    
31.2    
31.3    
31.5    
31.6    
31.8    
31.9    
32.1    
32.2    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.1    
34.3    
34.4    
34.6    
34.7    
34.9    
35.0    
35.2    
35.3    
35.5    
35.6    
35.7    
35.9    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
38.0    
38.1    
38.3    
38.4    
38.6    
38.7    
38.8    
39.0    
39.1    
39.3    
39.4    
39.6    
39.7    
39.9    
40.0    
40.2    
40.3    
40.5    
40.6    
40.8    
40.9    
41.1    
41.2    
41.4    
41.5    
41.7    
41.8    
41.9    
42.1    
42.2    
42.4    
42.5    
42.7    
42.8    
43.0    
43.1    
43.3    
43.4    
43.6    
43.7    
43.9    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.1    
45.2    
45.3    
45.5    
45.6    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.7    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.7    
47.9    
48.0    
48.2    
48.3    
48.4    
48.6    
48.7    
48.9    
49.0    
49.2    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.8    
51.0    
51.1    
51.3    
51.4    
51.6    
51.7    
51.8    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.4    
54.5    
54.7    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.1    
56.3    
56.4    
56.6    
56.7    
56.9    
57.0    
57.2    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.4    
61.6    
61.7    
61.9    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.3    
65.4    
65.6    
65.7    
65.9    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.8    
67.9    
68.1    
68.2    
68.4    
68.5    
68.7    
68.8    
69.0    
69.1    
69.3    
69.4    
69.6    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.5    
71.6    
71.8    
71.9    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
73.0    
73.1    
73.3    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.2    
75.3    
75.5    
75.6    
75.8    
75.9    
76.1    
76.2    
76.4    
76.5    
76.7    
76.8    
77.0    
77.1    
77.3    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.8    
79.9    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.1    
82.3    
82.4    
82.6    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.7    
85.8    
86.0    
86.1    
86.3    
86.4    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
91.0    
91.1    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 47887, rend_intergenic: 44003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58454, rend_intergenic: 50972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85766, rend_intergenic: 79415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122764, rend_intergenic: 118343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149462, rend_intergenic: 143246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160276, rend_intergenic: 157308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165970, rend_intergenic: 163245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173495, rend_intergenic: 169575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12440
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11820
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support