-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_6169640-6492390 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g27700.t1 Valid prediction for snap_scaffold_17-snap.1268-T1 Valid prediction for snap_scaffold_17-snap.1274-T1 Valid prediction for GlimmerHMM_glimmerT_41346-T1 Valid prediction for snap_scaffold_17-snap.1291-T1 Valid prediction for GeneMark_model.71183_t Valid prediction for snap_scaffold_17-snap.1300-T1 Valid prediction for HiQ_model.g27668.t1 Valid prediction for Augustus_model.g27691.t1 Valid prediction for snap_scaffold_17-snap.1281-T1 Valid prediction for GlimmerHMM_glimmerT_41349-T1 Valid prediction for GlimmerHMM_glimmerT_41327-T1 Valid prediction for GeneMark_model.71164_t Valid prediction for snap_scaffold_17-snap.1259-T1 Couldn't classify 160859, 161107 Sorry, prediction pasa_asmbl_17975.p1 fails validation. (TGC) CC 160859-161107 GT CGG (GTG) AG 162174-162353 TG AGT -recovered pasa_asmbl_17975.p1, terminal, 162174, 162353 Valid prediction for Augustus_model.g27689.t1 Valid prediction for GlimmerHMM_glimmerT_41326-T1 Valid prediction for GeneMark_model.71182_t Valid prediction for GeneMark_model.71178_t Valid prediction for HiQ_model.g27694.t1 Valid prediction for CodingQuarry_transcript_21954-T1 Valid prediction for snap_scaffold_17-snap.1261-T1 Valid prediction for Augustus_model.g27682.t1 Valid prediction for GeneMark_model.71168_t Couldn't classify 40207, 41046 Sorry, prediction pasa_asmbl_17970.p1 fails validation. (GTC) CA 40207-41046 AT AAA Valid prediction for snap_scaffold_17-snap.1249-T1 Valid prediction for GeneMark_model.71146_t Valid prediction for snap_scaffold_17-snap.1272-T1 Valid prediction for Augustus_model.g27685.t1 Valid prediction for GlimmerHMM_glimmerT_41352-T1 Valid prediction for snap_scaffold_17-snap.1289-T1 Valid prediction for snap_scaffold_17-snap.1263-T1 Valid prediction for GlimmerHMM_glimmerT_41324-T1 Valid prediction for snap_scaffold_17-snap.1255-T1 Valid prediction for GeneMark_model.71145_t Couldn't classify 43570, 43683 Sorry, prediction pasa_asmbl_17971.p1 fails validation. (GCG) GG 43570-43683 GT AGG (GTG) AG 44776-44943 GT GGG (AAC) AG 45103-45168 AC GAA -recovered pasa_asmbl_17971.p1, terminal, 45103, 45168 -recovered pasa_asmbl_17971.p1, internal, 44776, 44943 Valid prediction for GeneMark_model.71161_t Valid prediction for snap_scaffold_17-snap.1250-T1 Valid prediction for GeneMark_model.71151_t Valid prediction for Augustus_model.g27681.t1 Valid prediction for snap_scaffold_17-snap.1280-T1 Valid prediction for snap_scaffold_17-snap.1292-T1 Valid prediction for HiQ_model.g27670.t1 Valid prediction for snap_scaffold_17-snap.1260-T1 Valid prediction for GeneMark_model.71155_t Valid prediction for Augustus_model.g27697.t1 Valid prediction for GeneMark_model.71174_t Valid prediction for snap_scaffold_17-snap.1267-T1 Valid prediction for GlimmerHMM_glimmerT_41318-T1 Valid prediction for GeneMark_model.71181_t Valid prediction for snap_scaffold_17-snap.1294-T1 Valid prediction for GlimmerHMM_glimmerT_41345-T1 Valid prediction for GlimmerHMM_glimmerT_41350-T1 Couldn't classify 75463, 75505 Couldn't classify 78174, 78294 Sorry, prediction pasa_asmbl_17974.p2 fails validation. (CTG) CC 75463-75505 GT TGG (GGT) AG 76161-76293 GT CGG (GTC) AG 78174-78294 AT ACA -recovered pasa_asmbl_17974.p2, internal, 76161, 76293 Valid prediction for GlimmerHMM_glimmerT_41339-T1 Valid prediction for snap_scaffold_17-snap.1270-T1 Valid prediction for GeneMark_model.71177_t Valid prediction for GlimmerHMM_glimmerT_41328-T1 Valid prediction for GlimmerHMM_glimmerT_41334-T1 Valid prediction for GeneMark_model.71172_t Couldn't classify 54691, 54865 Couldn't classify 57766, 57887 Sorry, prediction pasa_asmbl_18597.p1 fails validation. (GAG) CC 54691-54865 GT GGG (GGA) AG 57766-57887 CT TGC Valid prediction for GlimmerHMM_glimmerT_41336-T1 Valid prediction for Augustus_model.g27675.t1 Valid prediction for GlimmerHMM_glimmerT_41340-T1 Valid prediction for snap_scaffold_17-snap.1301-T1 Valid prediction for GlimmerHMM_glimmerT_41320-T1 Valid prediction for CodingQuarry_transcript_21956-T1 Valid prediction for Augustus_model.g27687.t1 Valid prediction for snap_scaffold_17-snap.1295-T1 Valid prediction for CodingQuarry_transcript_21957-T1 Valid prediction for GlimmerHMM_glimmerT_41329-T1 Valid prediction for GeneMark_model.71162_t Valid prediction for snap_scaffold_17-snap.1283-T1 Valid prediction for GeneMark_model.71184_t Valid prediction for HiQ_model.g27676.t1 Valid prediction for snap_scaffold_17-snap.1264-T1 Valid prediction for Augustus_model.g27683.t1 Valid prediction for GeneMark_model.71170_t Valid prediction for snap_scaffold_17-snap.1302-T1 Valid prediction for snap_scaffold_17-snap.1276-T1 Valid prediction for snap_scaffold_17-snap.1277-T1 Valid prediction for GlimmerHMM_glimmerT_41322-T1 Valid prediction for Augustus_model.g27679.t1 Valid prediction for GlimmerHMM_glimmerT_41338-T1 Valid prediction for GeneMark_model.71150_t Couldn't classify 48312, 48703 Couldn't classify 50474, 50559 Sorry, prediction pasa_asmbl_17973.p1 fails validation. (AAC) AG 48312-48703 GT AGG (GCA) AG 50147-50292 GT GGG (CTG) AG 50474-50559 AT GCA -recovered pasa_asmbl_17973.p1, internal, 48312, 48703 -recovered pasa_asmbl_17973.p1, internal, 50147, 50292 Valid prediction for snap_scaffold_17-snap.1266-T1 Valid prediction for snap_scaffold_17-snap.1303-T1 Valid prediction for snap_scaffold_17-snap.1258-T1 Valid prediction for Augustus_model.g27692.t1 Valid prediction for snap_scaffold_17-snap.1253-T1 Valid prediction for Augustus_model.g27678.t1 Valid prediction for snap_scaffold_17-snap.1279-T1 Valid prediction for GlimmerHMM_glimmerT_41341-T1 Valid prediction for Augustus_model.g27680.t1 Valid prediction for snap_scaffold_17-snap.1248-T1 Valid prediction for snap_scaffold_17-snap.1285-T1 Valid prediction for Augustus_model.g27690.t1 Valid prediction for snap_scaffold_17-snap.1290-T1 Valid prediction for snap_scaffold_17-snap.1284-T1 Valid prediction for Augustus_model.g27699.t1 Valid prediction for GeneMark_model.71144_t Valid prediction for GlimmerHMM_glimmerT_41331-T1 Valid prediction for GeneMark_model.71179_t Valid prediction for GlimmerHMM_glimmerT_41348-T1 Valid prediction for Augustus_model.g27686.t1 Valid prediction for snap_scaffold_17-snap.1293-T1 Valid prediction for GeneMark_model.71176_t Valid prediction for GlimmerHMM_glimmerT_41333-T1 Valid prediction for GeneMark_model.71153_t Valid prediction for Augustus_model.g27698.t1 Valid prediction for pasa_asmbl_17969.p1 Couldn't classify 199979, 200091 Sorry, prediction pasa_asmbl_17978.p1 fails validation. (GGA) TA 199979-200091 GT GAG (AGA) AG 200260-200383 GT AGG (GTG) AG 200526-200801 GT ACG (TTT) AG 200940-201020 GT CTG (GGT) AG 203745-203798 GT AGG (GGA) AG 203883-203936 GT AAG (GGT) AG 204031-204084 GT AGG (GGA) AG 204945-204998 GT CTG (GGG) AG 205098-205142 GT GGG (GGA) AG 206224-206277 GT ATG (GGT) AG 206378-206431 GT AGG (GGA) AG 206803-206838 GT TGG (GTT) AG 206943-206972 GT CTG (GGG) AG 207188-207241 GT CAG (GGT) AG 207378-207431 GT GGG (GGA) AG 208618-208671 GT CTG (GGT) AG 209210-209263 GT CTG (GGT) AG 209356-209409 GT CCG (GGT) AG 209519-209572 GT AGG (GGC) AG 209792-209845 GT AGG (GGT) AG 209967-210011 GT GGG (GGA) AG 210121-210183 GT AGG (GGT) AG 210333-210386 GT AGG (GGT) AG 210542-210583 GT ACG (GTT) AG 210737-210769 GT CAG (GGT) AG 210971-211024 GT TGG (GGT) AG 211360-211413 GT AGG (GGT) AG 211557-211610 GT CGG (GGT) AG 211694-211747 GT TGG (GGA) AG 211866-211919 GT GGG (GGG) AG 212304-212408 GT ATG (GGG) AG 213052-213096 GT AGG (GGT) AG 213779-213856 GT AGG (GGA) AG 214010-214045 GT AGG (GGC) AG 214134-214187 GT ATG (GGT) AG 214416-214460 GT CAG (GGG) AG 214614-214649 GT AGG (GAT) AG 214752-214865 GT AAG (GGC) AG 215157-215210 GT AGG (GGT) AG 215367-215420 GT AGG (GGA) AG 215542-215595 GT CTG (GGT) AG 215688-215741 GT AGG (GGC) AG 215923-215976 GT TGG (GGA) AG 216075-216128 GT ATG (GGC) AG 216241-216294 GT CCG (GGC) AG 216381-216425 GT AGG (GGT) AG 216939-216992 GT ACG (GGT) AG 217084-217137 GT CGG (GGT) AG 217326-217379 GT CGG (GGT) AG 217757-217828 GT CGG (GGT) AG 218014-218049 GT AGG (GGG) AG 218135-218179 GT GAG (GGT) AG 218433-218612 GT GAG (GGA) AG 218899-218965 GT TGG (CCA) AG 219064-219246 GT AGG (GTG) AG 219382-219459 GT AGG (GCC) AG 219581-219774 AA AAA -recovered pasa_asmbl_17978.p1, terminal, 219382, 219459 -recovered pasa_asmbl_17978.p1, terminal, 219581, 219774 -recovered pasa_asmbl_17978.p1, internal, 200260, 200383 -recovered pasa_asmbl_17978.p1, internal, 200526, 200801 -recovered pasa_asmbl_17978.p1, internal, 200940, 201020 -recovered pasa_asmbl_17978.p1, internal, 203745, 203798 -recovered pasa_asmbl_17978.p1, internal, 203883, 203936 -recovered pasa_asmbl_17978.p1, internal, 204031, 204084 -recovered pasa_asmbl_17978.p1, internal, 204945, 204998 -recovered pasa_asmbl_17978.p1, internal, 205098, 205142 -recovered pasa_asmbl_17978.p1, internal, 206224, 206277 -recovered pasa_asmbl_17978.p1, internal, 206378, 206431 -recovered pasa_asmbl_17978.p1, internal, 206803, 206838 -recovered pasa_asmbl_17978.p1, internal, 206943, 206972 -recovered pasa_asmbl_17978.p1, internal, 207188, 207241 -recovered pasa_asmbl_17978.p1, internal, 207378, 207431 -recovered pasa_asmbl_17978.p1, internal, 208618, 208671 -recovered pasa_asmbl_17978.p1, internal, 209210, 209263 -recovered pasa_asmbl_17978.p1, internal, 209356, 209409 -recovered pasa_asmbl_17978.p1, internal, 209519, 209572 -recovered pasa_asmbl_17978.p1, internal, 209792, 209845 -recovered pasa_asmbl_17978.p1, internal, 209967, 210011 -recovered pasa_asmbl_17978.p1, internal, 210121, 210183 -recovered pasa_asmbl_17978.p1, internal, 210333, 210386 -recovered pasa_asmbl_17978.p1, internal, 210542, 210583 -recovered pasa_asmbl_17978.p1, internal, 210737, 210769 -recovered pasa_asmbl_17978.p1, internal, 210971, 211024 -recovered pasa_asmbl_17978.p1, internal, 211360, 211413 -recovered pasa_asmbl_17978.p1, internal, 211557, 211610 -recovered pasa_asmbl_17978.p1, internal, 211694, 211747 -recovered pasa_asmbl_17978.p1, internal, 211866, 211919 -recovered pasa_asmbl_17978.p1, internal, 212304, 212408 -recovered pasa_asmbl_17978.p1, internal, 213052, 213096 -recovered pasa_asmbl_17978.p1, internal, 213779, 213856 -recovered pasa_asmbl_17978.p1, internal, 214010, 214045 -recovered pasa_asmbl_17978.p1, internal, 214134, 214187 -recovered pasa_asmbl_17978.p1, internal, 214416, 214460 -recovered pasa_asmbl_17978.p1, internal, 214614, 214649 -recovered pasa_asmbl_17978.p1, internal, 214752, 214865 -recovered pasa_asmbl_17978.p1, internal, 215157, 215210 -recovered pasa_asmbl_17978.p1, internal, 215367, 215420 -recovered pasa_asmbl_17978.p1, internal, 215542, 215595 -recovered pasa_asmbl_17978.p1, internal, 215688, 215741 -recovered pasa_asmbl_17978.p1, internal, 215923, 215976 -recovered pasa_asmbl_17978.p1, internal, 216075, 216128 -recovered pasa_asmbl_17978.p1, internal, 216241, 216294 -recovered pasa_asmbl_17978.p1, internal, 216381, 216425 -recovered pasa_asmbl_17978.p1, internal, 216939, 216992 -recovered pasa_asmbl_17978.p1, internal, 217084, 217137 -recovered pasa_asmbl_17978.p1, internal, 217326, 217379 -recovered pasa_asmbl_17978.p1, internal, 217757, 217828 -recovered pasa_asmbl_17978.p1, internal, 218014, 218049 -recovered pasa_asmbl_17978.p1, internal, 218135, 218179 -recovered pasa_asmbl_17978.p1, internal, 218433, 218612 -recovered pasa_asmbl_17978.p1, internal, 218899, 218965 -recovered pasa_asmbl_17978.p1, internal, 219064, 219246 -recovered pasa_asmbl_17978.p1, internal, 219382, 219459 Valid prediction for snap_scaffold_17-snap.1275-T1 Valid prediction for GlimmerHMM_glimmerT_41347-T1 Valid prediction for GlimmerHMM_glimmerT_41325-T1 Valid prediction for GeneMark_model.71190_t Valid prediction for GeneMark_model.71157_t Valid prediction for snap_scaffold_17-snap.1288-T1 Valid prediction for snap_scaffold_17-snap.1287-T1 Couldn't classify 192583, 193064 Sorry, prediction pasa_asmbl_17976.p1 fails validation. (ATG) AG 192386-192476 GT AGG (GGT) AG 192583-193064 CC AGC -recovered pasa_asmbl_17976.p1, initial, 192386, 192476 -recovered pasa_asmbl_17976.p1, internal, 192386, 192476 Valid prediction for Augustus_model.g27677.t1 Valid prediction for HiQ_model.g27693.t1 Valid prediction for Augustus_model.g27672.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.1297-T1 Valid prediction for GeneMark_model.71165_t Valid prediction for snap_scaffold_17-snap.1273-T1 Valid prediction for snap_scaffold_17-snap.1286-T1 Valid prediction for GeneMark_model.71140_t Valid prediction for snap_scaffold_17-snap.1251-T1 Valid prediction for GeneMark_model.71149_t Valid prediction for GeneMark_model.71156_t Valid prediction for snap_scaffold_17-snap.1299-T1 Valid prediction for GlimmerHMM_glimmerT_41323-T1 Valid prediction for GeneMark_model.71160_t Valid prediction for GlimmerHMM_glimmerT_41337-T1 Valid prediction for GlimmerHMM_glimmerT_41330-T1 Valid prediction for GlimmerHMM_glimmerT_41342-T1 Valid prediction for snap_scaffold_17-snap.1265-T1 Valid prediction for GeneMark_model.71189_t Valid prediction for GeneMark_model.71169_t Valid prediction for GeneMark_model.71166_t Valid prediction for snap_scaffold_17-snap.1296-T1 Valid prediction for snap_scaffold_17-snap.1278-T1 Valid prediction for GeneMark_model.71154_t Valid prediction for GeneMark_model.71142_t Valid prediction for GlimmerHMM_glimmerT_41351-T1 Valid prediction for CodingQuarry_transcript_21953-T1 Valid prediction for Augustus_model.g27673.t1 Valid prediction for CodingQuarry_transcript_21955-T1 Valid prediction for CodingQuarry_transcript_21952-T1 Valid prediction for GlimmerHMM_glimmerT_41335-T1 Valid prediction for GlimmerHMM_glimmerT_41343-T1 Valid prediction for GeneMark_model.71173_t Valid prediction for snap_scaffold_17-snap.1257-T1 Valid prediction for GeneMark_model.71186_t Valid prediction for GlimmerHMM_glimmerT_41344-T1 Valid prediction for HiQ_model.g27669.t1 Valid prediction for snap_scaffold_17-snap.1304-T1 Valid prediction for GeneMark_model.71188_t Valid prediction for Augustus_model.g27684.t1 Valid prediction for GeneMark_model.71147_t Valid prediction for snap_scaffold_17-snap.1254-T1 Valid prediction for snap_scaffold_17-snap.1305-T1 Valid prediction for Augustus_model.g27671.t1 Valid prediction for Augustus_model.g27696.t1 Valid prediction for Augustus_model.g27695.t1 Valid prediction for Augustus_model.g27701.t1 Valid prediction for GeneMark_model.71159_t Valid prediction for snap_scaffold_17-snap.1262-T1 Valid prediction for GeneMark_model.71141_t Valid prediction for snap_scaffold_17-snap.1269-T1 Valid prediction for GeneMark_model.71143_t Valid prediction for snap_scaffold_17-snap.1252-T1 Valid prediction for snap_scaffold_17-snap.1256-T1 Valid prediction for pasa_asmbl_19017.p1 Valid prediction for snap_scaffold_17-snap.1298-T1 Valid prediction for GeneMark_model.71167_t Valid prediction for GeneMark_model.71187_t Valid prediction for HiQ_model.g27674.t1 Valid prediction for snap_scaffold_17-snap.1271-T1 Valid prediction for GlimmerHMM_glimmerT_41319-T1 Valid prediction for GeneMark_model.71148_t Valid prediction for GlimmerHMM_glimmerT_41321-T1 Valid prediction for snap_scaffold_17-snap.1282-T1 Valid prediction for GlimmerHMM_glimmerT_41332-T1 Valid prediction for GeneMark_model.71171_t Valid prediction for GeneMark_model.71158_t Valid prediction for GeneMark_model.71191_t Valid prediction for Augustus_model.g27688.t1 Valid prediction for pasa_asmbl_19011.p1 Valid prediction for GeneMark_model.71152_t Valid prediction for GeneMark_model.71180_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 162353, rend_intergenic: 162350 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7164, rend_intergenic: 6147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59353, rend_intergenic: 54622 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92542, rend_intergenic: 89736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100814, rend_intergenic: 96567 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109942, rend_intergenic: 101919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131551, rend_intergenic: 130484 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155692, rend_intergenic: 152643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162724, rend_intergenic: 156119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 322751 -exon list size: 853 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 0.9 1.1 1.2 1.3 1.4 1.5 1.6 1.8 1.9 2.0 2.1 2.2 2.3 2.5 2.6 2.7 2.8 2.9 3.0 3.2 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.4 4.6 4.7 4.8 4.9 5.0 5.1 5.3 5.4 5.5 5.6 5.7 5.8 6.0 6.1 6.2 6.3 6.4 6.5 6.7 6.8 6.9 7.0 7.1 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.7 8.8 8.9 9.0 9.1 9.2 9.4 9.5 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.4 10.5 10.6 10.8 10.9 11.0 11.1 11.2 11.3 11.5 11.6 11.7 11.8 11.9 12.0 12.2 12.3 12.4 12.5 12.6 12.7 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.9 15.0 15.1 15.2 15.3 15.4 15.6 15.7 15.8 15.9 16.0 16.1 16.3 16.4 16.5 16.6 16.7 16.8 17.0 17.1 17.2 17.3 17.4 17.5 17.7 17.8 17.9 18.0 18.1 18.2 18.4 18.5 18.6 18.7 18.8 18.9 19.1 19.2 19.3 19.4 19.5 19.6 19.8 19.9 20.0 20.1 20.2 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.2 23.3 23.4 23.5 23.6 23.7 23.9 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.7 28.8 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.8 29.9 30.1 30.2 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.3 31.5 31.6 31.7 31.8 31.9 32.0 32.2 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.5 33.6 33.7 33.8 33.9 34.0 34.2 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.3 35.4 35.6 35.7 35.8 35.9 36.0 36.1 36.3 36.4 36.5 36.6 36.7 36.8 37.0 37.1 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.2 38.4 38.5 38.6 38.7 38.8 38.9 39.1 39.2 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.1 40.2 40.4 40.5 40.6 40.7 40.8 40.9 41.1 41.2 41.3 41.4 41.5 41.6 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.2 43.3 43.4 43.5 43.6 43.7 43.9 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.1 45.3 45.4 45.5 45.6 45.7 45.8 46.0 46.1 46.2 46.3 46.4 46.5 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.7 48.8 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.2 51.3 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.5 53.6 53.7 53.8 53.9 54.0 54.2 54.3 54.4 54.5 54.6 54.7 54.9 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.1 56.3 56.4 56.5 56.6 56.7 56.8 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.4 58.5 58.6 58.7 58.8 58.9 59.1 59.2 59.3 59.4 59.5 59.6 59.8 59.9 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.8 60.9 61.1 61.2 61.3 61.4 61.5 61.6 61.8 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 62.9 63.0 63.2 63.3 63.4 63.5 63.6 63.7 63.9 64.0 64.1 64.2 64.3 64.4 64.6 64.7 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.8 66.0 66.1 66.2 66.3 66.4 66.5 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.8 68.0 68.1 68.2 68.3 68.4 68.5 68.7 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.8 69.9 70.1 70.2 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.2 71.3 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.1 76.3 76.4 76.5 76.6 76.7 76.8 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.8 79.9 80.0 80.1 80.2 80.4 80.5 80.6 80.7 80.8 80.9 81.1 81.2 81.3 81.4 81.5 81.6 81.8 81.9 82.0 82.1 82.2 82.3 82.5 82.6 82.7 82.8 82.9 83.0 83.2 83.3 83.4 83.5 83.6 83.7 83.9 84.0 84.1 84.2 84.3 84.4 84.6 84.7 84.8 84.9 85.0 85.1 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.3 87.4 87.5 87.6 87.7 87.8 88.0 88.1 88.2 88.3 88.4 88.5 88.7 88.8 88.9 89.0 89.1 89.2 89.4 89.5 89.6 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.5 90.6 90.8 90.9 91.0 91.1 91.2 91.3 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.9 93.0 93.1 93.2 93.3 93.5 93.6 93.7 93.8 93.9 94.0 94.2 94.3 94.4 94.5 94.6 94.7 94.9 95.0 95.1 95.2 95.3 95.4 95.6 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.8 97.0 97.1 97.2 97.3 97.4 97.5 97.7 97.8 97.9 98.0 98.1 98.2 98.4 98.5 98.6 98.7 98.8 98.9 99.1 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 44 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 162353, rend_intergenic: 162350 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7164, rend_intergenic: 6147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59353, rend_intergenic: 54622 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92542, rend_intergenic: 89736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100814, rend_intergenic: 96567 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109942, rend_intergenic: 101919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131551, rend_intergenic: 130484 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155692, rend_intergenic: 152643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162724, rend_intergenic: 156119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 34 predictions persist after filtering for low support -building DP trellis -building trellis in range 300898 - 322751 -exon list size: 16 building trellis 5.6 11.1 16.7 22.2 27.8 33.3 38.9 44.4 50.0 55.6 61.1 66.7 72.2 77.8 83.3 88.9 94.4 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 300898 - 315113 -exon list size: 8 building trellis 10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 304423 - 315113 -exon list size: 6 building trellis 12.5 25.0 37.5 50.0 62.5 75.0 87.5 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support