-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_4476205-4664057

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.956-T1
Valid prediction for GlimmerHMM_glimmerT_41096-T1
Valid prediction for GeneMark_model.70809_t
Valid prediction for snap_scaffold_17-snap.964-T1
Valid prediction for GeneMark_model.70801_t
Valid prediction for GeneMark_model.70830_t
Valid prediction for GeneMark_model.70797_t
Valid prediction for snap_scaffold_17-snap.953-T1
Valid prediction for GeneMark_model.70816_t
Valid prediction for GeneMark_model.70829_t
Valid prediction for GeneMark_model.70834_t
Valid prediction for GeneMark_model.70823_t
Valid prediction for Augustus_model.g27528.t1
Valid prediction for snap_scaffold_17-snap.971-T1
Valid prediction for GeneMark_model.70819_t
Valid prediction for GlimmerHMM_glimmerT_41093-T1
Valid prediction for GeneMark_model.70812_t
Valid prediction for GlimmerHMM_glimmerT_41108-T1
Valid prediction for GeneMark_model.70807_t
Valid prediction for GeneMark_model.70805_t
Valid prediction for GeneMark_model.70839_t
Valid prediction for snap_scaffold_17-snap.975-T1
Valid prediction for snap_scaffold_17-snap.962-T1
Valid prediction for snap_scaffold_17-snap.977-T1
Valid prediction for Augustus_model.g27526.t1
Valid prediction for snap_scaffold_17-snap.944-T1
Valid prediction for GlimmerHMM_glimmerT_41103-T1
Valid prediction for snap_scaffold_17-snap.966-T1
Valid prediction for GeneMark_model.70824_t
Valid prediction for GlimmerHMM_glimmerT_41090-T1
Couldn't classify 171587, 172078
Couldn't classify 172180, 172800
Sorry, prediction pasa_asmbl_17910.p1 fails validation.
(CCA)	 CC	171587-172078	GT	AGG
(GTG)	 AG	172180-172800	GT	GGG
-recovered pasa_asmbl_17910.p1, internal, 172180, 172800
Valid prediction for Augustus_model.g27517.t1
Valid prediction for GeneMark_model.70821_t
Valid prediction for GeneMark_model.70800_t
Valid prediction for GlimmerHMM_glimmerT_41088-T1
Valid prediction for GeneMark_model.70803_t
Valid prediction for GeneMark_model.70832_t
Valid prediction for snap_scaffold_17-snap.943-T1
Valid prediction for GlimmerHMM_glimmerT_41107-T1
Valid prediction for Augustus_model.g27530.t1
Valid prediction for GeneMark_model.70837_t
Valid prediction for snap_scaffold_17-snap.973-T1
Valid prediction for GeneMark_model.70796_t
Valid prediction for snap_scaffold_17-snap.969-T1
Valid prediction for GeneMark_model.70794_t
Valid prediction for snap_scaffold_17-snap.950-T1
Valid prediction for GlimmerHMM_glimmerT_41110-T1
Valid prediction for GlimmerHMM_glimmerT_41106-T1
Valid prediction for GeneMark_model.70811_t
Valid prediction for snap_scaffold_17-snap.942-T1
Valid prediction for snap_scaffold_17-snap.958-T1
Valid prediction for snap_scaffold_17-snap.955-T1
Valid prediction for snap_scaffold_17-snap.963-T1
Valid prediction for snap_scaffold_17-snap.972-T1
Valid prediction for Augustus_model.g27527.t1
Valid prediction for HiQ_model.g27524.t1
Valid prediction for snap_scaffold_17-snap.961-T1
Valid prediction for GeneMark_model.70826_t
Valid prediction for snap_scaffold_17-snap.957-T1
Valid prediction for GlimmerHMM_glimmerT_41099-T1
Valid prediction for snap_scaffold_17-snap.974-T1
Valid prediction for GeneMark_model.70814_t
Valid prediction for snap_scaffold_17-snap.948-T1
Valid prediction for snap_scaffold_17-snap.947-T1
Valid prediction for GeneMark_model.70840_t
Valid prediction for GlimmerHMM_glimmerT_41094-T1
Valid prediction for GeneMark_model.70792_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_17911.p1
Valid prediction for GeneMark_model.70835_t
Valid prediction for snap_scaffold_17-snap.959-T1
Valid prediction for snap_scaffold_17-snap.965-T1
Valid prediction for GeneMark_model.70804_t
Valid prediction for HiQ_model.g27525.t1
Valid prediction for snap_scaffold_17-snap.946-T1
Couldn't classify 50139, 50285
Sorry, prediction pasa_asmbl_18913.p1 fails validation.
(CTG)	 TC	50139-50285	GT	ATG
(GTG)	 AG	52920-53012	GT	AGG
(GGT)	 AG	53363-53782	GA	GAG
-recovered pasa_asmbl_18913.p1, terminal, 53363, 53782
-recovered pasa_asmbl_18913.p1, internal, 52920, 53012
Valid prediction for GlimmerHMM_glimmerT_41091-T1
Valid prediction for pasa_asmbl_18915.p1
Valid prediction for GlimmerHMM_glimmerT_41105-T1
Valid prediction for GeneMark_model.70795_t
Valid prediction for GeneMark_model.70831_t
Valid prediction for GeneMark_model.70817_t
Valid prediction for GlimmerHMM_glimmerT_41097-T1
Valid prediction for GeneMark_model.70838_t
Valid prediction for Augustus_model.g27520.t1
Valid prediction for GeneMark_model.70828_t
Valid prediction for Augustus_model.g27516.t1
Valid prediction for CodingQuarry_transcript_21910-T1
Valid prediction for GeneMark_model.70810_t
Valid prediction for GlimmerHMM_glimmerT_41089-T1
Valid prediction for GeneMark_model.70813_t
Valid prediction for GeneMark_model.70818_t
Valid prediction for snap_scaffold_17-snap.949-T1
Valid prediction for GlimmerHMM_glimmerT_41104-T1
Valid prediction for GlimmerHMM_glimmerT_41095-T1
Valid prediction for GeneMark_model.70827_t
Valid prediction for HiQ_model.g27529.t1
Valid prediction for snap_scaffold_17-snap.970-T1
Valid prediction for GeneMark_model.70815_t
Valid prediction for Augustus_model.g27522.t1
Valid prediction for CodingQuarry_transcript_21909-T1
Valid prediction for snap_scaffold_17-snap.951-T1
Valid prediction for GlimmerHMM_glimmerT_41100-T1
Valid prediction for Augustus_model.g27521.t1
Valid prediction for GeneMark_model.70841_t
Valid prediction for GeneMark_model.70799_t
Valid prediction for GeneMark_model.70806_t
Valid prediction for pasa_asmbl_18914.p1
Valid prediction for snap_scaffold_17-snap.967-T1
Valid prediction for snap_scaffold_17-snap.941-T1
Valid prediction for HiQ_model.g27523.t1
Valid prediction for GlimmerHMM_glimmerT_41102-T1
Valid prediction for GlimmerHMM_glimmerT_41098-T1
Valid prediction for GeneMark_model.70820_t
Valid prediction for snap_scaffold_17-snap.968-T1
Valid prediction for Augustus_model.g27518.t1
Valid prediction for GlimmerHMM_glimmerT_41109-T1
Valid prediction for pasa_asmbl_18917.p1
Valid prediction for snap_scaffold_17-snap.952-T1
Valid prediction for GeneMark_model.70833_t
Valid prediction for GeneMark_model.70825_t
Valid prediction for GeneMark_model.70802_t
Valid prediction for GeneMark_model.70836_t
Valid prediction for CodingQuarry_transcript_21908-T1
Valid prediction for GlimmerHMM_glimmerT_41101-T1
Valid prediction for GeneMark_model.70793_t
Valid prediction for GeneMark_model.70808_t
Valid prediction for snap_scaffold_17-snap.954-T1
Valid prediction for snap_scaffold_17-snap.976-T1
Valid prediction for Augustus_model.g27519.t1
Valid prediction for GlimmerHMM_glimmerT_41092-T1
Valid prediction for snap_scaffold_17-snap.945-T1
Valid prediction for GeneMark_model.70798_t
Valid prediction for snap_scaffold_17-snap.960-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20950, rend_intergenic: 2637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44013, rend_intergenic: 33898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50255, rend_intergenic: 44862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57574, rend_intergenic: 54214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58777, rend_intergenic: 58181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71190, rend_intergenic: 66759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97003, rend_intergenic: 72250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110880, rend_intergenic: 98078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139359, rend_intergenic: 134072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163009, rend_intergenic: 157601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178612, rend_intergenic: 175135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 187853
-exon list size: 657


building trellis

0.2    
0.3    
0.5    
0.6    
0.8    
0.9    
1.1    
1.2    
1.4    
1.5    
1.7    
1.8    
2.0    
2.1    
2.3    
2.4    
2.6    
2.7    
2.9    
3.0    
3.2    
3.3    
3.5    
3.6    
3.8    
3.9    
4.1    
4.2    
4.4    
4.6    
4.7    
4.9    
5.0    
5.2    
5.3    
5.5    
5.6    
5.8    
5.9    
6.1    
6.2    
6.4    
6.5    
6.7    
6.8    
7.0    
7.1    
7.3    
7.4    
7.6    
7.7    
7.9    
8.0    
8.2    
8.3    
8.5    
8.6    
8.8    
9.0    
9.1    
9.3    
9.4    
9.6    
9.7    
9.9    
10.0    
10.2    
10.3    
10.5    
10.6    
10.8    
10.9    
11.1    
11.2    
11.4    
11.5    
11.7    
11.8    
12.0    
12.1    
12.3    
12.4    
12.6    
12.7    
12.9    
13.1    
13.2    
13.4    
13.5    
13.7    
13.8    
14.0    
14.1    
14.3    
14.4    
14.6    
14.7    
14.9    
15.0    
15.2    
15.3    
15.5    
15.6    
15.8    
15.9    
16.1    
16.2    
16.4    
16.5    
16.7    
16.8    
17.0    
17.1    
17.3    
17.5    
17.6    
17.8    
17.9    
18.1    
18.2    
18.4    
18.5    
18.7    
18.8    
19.0    
19.1    
19.3    
19.4    
19.6    
19.7    
19.9    
20.0    
20.2    
20.3    
20.5    
20.6    
20.8    
20.9    
21.1    
21.2    
21.4    
21.5    
21.7    
21.9    
22.0    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.1    
23.2    
23.4    
23.5    
23.7    
23.8    
24.0    
24.1    
24.3    
24.4    
24.6    
24.7    
24.9    
25.0    
25.2    
25.3    
25.5    
25.6    
25.8    
25.9    
26.1    
26.3    
26.4    
26.6    
26.7    
26.9    
27.0    
27.2    
27.3    
27.5    
27.6    
27.8    
27.9    
28.1    
28.2    
28.4    
28.5    
28.7    
28.8    
29.0    
29.1    
29.3    
29.4    
29.6    
29.7    
29.9    
30.0    
30.2    
30.3    
30.5    
30.7    
30.8    
31.0    
31.1    
31.3    
31.4    
31.6    
31.7    
31.9    
32.0    
32.2    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.1    
34.3    
34.4    
34.6    
34.7    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
36.0    
36.1    
36.3    
36.4    
36.6    
36.7    
36.9    
37.0    
37.2    
37.3    
37.5    
37.6    
37.8    
37.9    
38.1    
38.2    
38.4    
38.5    
38.7    
38.8    
39.0    
39.2    
39.3    
39.5    
39.6    
39.8    
39.9    
40.1    
40.2    
40.4    
40.5    
40.7    
40.8    
41.0    
41.1    
41.3    
41.4    
41.6    
41.7    
41.9    
42.0    
42.2    
42.3    
42.5    
42.6    
42.8    
42.9    
43.1    
43.2    
43.4    
43.6    
43.7    
43.9    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.1    
46.3    
46.4    
46.6    
46.7    
46.9    
47.0    
47.2    
47.3    
47.5    
47.6    
47.8    
48.0    
48.1    
48.3    
48.4    
48.6    
48.7    
48.9    
49.0    
49.2    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.8    
51.0    
51.1    
51.3    
51.4    
51.6    
51.7    
51.9    
52.0    
52.2    
52.4    
52.5    
52.7    
52.8    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.9    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.1    
56.3    
56.4    
56.6    
56.8    
56.9    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.9    
59.0    
59.2    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.7    
60.8    
61.0    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.4    
62.5    
62.7    
62.8    
63.0    
63.1    
63.3    
63.4    
63.6    
63.7    
63.9    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.3    
65.4    
65.6    
65.7    
65.9    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.1    
68.3    
68.4    
68.6    
68.7    
68.9    
69.0    
69.2    
69.3    
69.5    
69.7    
69.8    
70.0    
70.1    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.2    
71.3    
71.5    
71.6    
71.8    
71.9    
72.1    
72.2    
72.4    
72.5    
72.7    
72.8    
73.0    
73.1    
73.3    
73.4    
73.6    
73.7    
73.9    
74.1    
74.2    
74.4    
74.5    
74.7    
74.8    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.8    
80.0    
80.1    
80.3    
80.4    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.7    
90.9    
91.0    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.7    
96.8    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.9    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 20950, rend_intergenic: 2637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44013, rend_intergenic: 33898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50255, rend_intergenic: 44862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57574, rend_intergenic: 54214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58777, rend_intergenic: 58181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71190, rend_intergenic: 66759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97003, rend_intergenic: 72250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110880, rend_intergenic: 98078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139359, rend_intergenic: 134072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163009, rend_intergenic: 157601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178612, rend_intergenic: 175135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support