-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_4127066-4241133

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.70706_t
Valid prediction for GeneMark_model.70715_t
Valid prediction for GlimmerHMM_glimmerT_41046-T1
Valid prediction for snap_scaffold_17-snap.879-T1
Valid prediction for GlimmerHMM_glimmerT_41051-T1
Couldn't classify 79009, 79110
Sorry, prediction CodingQuarry_transcript_21901-T1 fails validation.
(ATG)	 CC	78161-78265	GC	TGG
(GAC)	 TA	79009-79110	GT	GGG
(GTG)	 AG	79215-79268	AA	AAA
-recovered CodingQuarry_transcript_21901-T1, initial, 78161, 78265
-recovered CodingQuarry_transcript_21901-T1, terminal, 79215, 79268
Valid prediction for GeneMark_model.70724_t
Valid prediction for GeneMark_model.70717_t
Valid prediction for GeneMark_model.70713_t
Valid prediction for snap_scaffold_17-snap.882-T1
Valid prediction for GeneMark_model.70718_t
Valid prediction for GeneMark_model.70702_t
Valid prediction for snap_scaffold_17-snap.868-T1
Couldn't classify 78474, 78530
Sorry, prediction CodingQuarry_transcript_21902-T1 fails validation.
(ATG)	 CC	78161-78265	GC	TGG
(GAG)	 TA	78474-78530	CG	AAC
-recovered CodingQuarry_transcript_21902-T1, initial, 78161, 78265
Valid prediction for GeneMark_model.70726_t
Valid prediction for snap_scaffold_17-snap.877-T1
Valid prediction for GlimmerHMM_glimmerT_41044-T1
Valid prediction for GeneMark_model.70700_t
Valid prediction for snap_scaffold_17-snap.874-T1
Valid prediction for Augustus_model.g27488.t1
Valid prediction for GeneMark_model.70696_t
Valid prediction for GlimmerHMM_glimmerT_41048-T1
Valid prediction for GeneMark_model.70698_t
Valid prediction for snap_scaffold_17-snap.878-T1
Valid prediction for GlimmerHMM_glimmerT_41039-T1
Valid prediction for snap_scaffold_17-snap.884-T1
Valid prediction for GlimmerHMM_glimmerT_41038-T1
Valid prediction for GeneMark_model.70731_t
Valid prediction for Augustus_model.g27487.t1
Valid prediction for GlimmerHMM_glimmerT_41041-T1
Valid prediction for Augustus_model.g27491.t1
Valid prediction for GlimmerHMM_glimmerT_41036-T1
Valid prediction for GeneMark_model.70709_t
Valid prediction for GeneMark_model.70694_t
Valid prediction for GlimmerHMM_glimmerT_41052-T1
Valid prediction for Augustus_model.g27492.t1
Valid prediction for GeneMark_model.70703_t
Valid prediction for GeneMark_model.70711_t
Valid prediction for snap_scaffold_17-snap.870-T1
Valid prediction for Augustus_model.g27493.t1
Valid prediction for GlimmerHMM_glimmerT_41040-T1
Valid prediction for GeneMark_model.70729_t
Valid prediction for GlimmerHMM_glimmerT_41047-T1
Valid prediction for GeneMark_model.70722_t
Valid prediction for Augustus_model.g27485.t1
Valid prediction for snap_scaffold_17-snap.883-T1
Valid prediction for GeneMark_model.70721_t
Valid prediction for snap_scaffold_17-snap.885-T1
Valid prediction for GeneMark_model.70720_t
Valid prediction for GlimmerHMM_glimmerT_41049-T1
Valid prediction for snap_scaffold_17-snap.886-T1
Valid prediction for Augustus_model.g27490.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.70712_t
Valid prediction for snap_scaffold_17-snap.876-T1
Valid prediction for snap_scaffold_17-snap.888-T1
Valid prediction for snap_scaffold_17-snap.887-T1
Valid prediction for snap_scaffold_17-snap.875-T1
Valid prediction for GeneMark_model.70727_t
Valid prediction for snap_scaffold_17-snap.871-T1
Valid prediction for snap_scaffold_17-snap.872-T1
Valid prediction for GeneMark_model.70705_t
Valid prediction for GeneMark_model.70699_t
Valid prediction for GlimmerHMM_glimmerT_41043-T1
Valid prediction for snap_scaffold_17-snap.881-T1
Valid prediction for GeneMark_model.70723_t
Valid prediction for pasa_asmbl_18888.p1
Valid prediction for GlimmerHMM_glimmerT_41050-T1
Valid prediction for GeneMark_model.70708_t
Valid prediction for snap_scaffold_17-snap.869-T1
Valid prediction for Augustus_model.g27486.t1
Valid prediction for snap_scaffold_17-snap.867-T1
Valid prediction for CodingQuarry_transcript_21900-T1
Valid prediction for GlimmerHMM_glimmerT_41037-T1
Valid prediction for GeneMark_model.70707_t
Valid prediction for GlimmerHMM_glimmerT_41045-T1
Valid prediction for GlimmerHMM_glimmerT_41042-T1
Valid prediction for GeneMark_model.70710_t
Valid prediction for GeneMark_model.70697_t
Valid prediction for GeneMark_model.70719_t
Valid prediction for GeneMark_model.70728_t
Valid prediction for GeneMark_model.70695_t
Valid prediction for snap_scaffold_17-snap.880-T1
Valid prediction for GeneMark_model.70730_t
Valid prediction for GeneMark_model.70725_t
Valid prediction for HiQ_model.g27489.t1
Valid prediction for GeneMark_model.70701_t
Valid prediction for GeneMark_model.70714_t
Valid prediction for Augustus_model.g27494.t1
Valid prediction for GeneMark_model.70704_t
Valid prediction for snap_scaffold_17-snap.873-T1
Valid prediction for GlimmerHMM_glimmerT_41035-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16905, rend_intergenic: 13822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36764, rend_intergenic: 23140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40001, rend_intergenic: 37802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43148, rend_intergenic: 41415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51715, rend_intergenic: 49650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 114068
-exon list size: 415


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.2    
2.4    
2.6    
2.9    
3.1    
3.4    
3.6    
3.8    
4.1    
4.3    
4.6    
4.8    
5.0    
5.3    
5.5    
5.8    
6.0    
6.2    
6.5    
6.7    
7.0    
7.2    
7.4    
7.7    
7.9    
8.2    
8.4    
8.6    
8.9    
9.1    
9.4    
9.6    
9.8    
10.1    
10.3    
10.6    
10.8    
11.0    
11.3    
11.5    
11.8    
12.0    
12.2    
12.5    
12.7    
12.9    
13.2    
13.4    
13.7    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.3    
15.6    
15.8    
16.1    
16.3    
16.5    
16.8    
17.0    
17.3    
17.5    
17.7    
18.0    
18.2    
18.5    
18.7    
18.9    
19.2    
19.4    
19.7    
19.9    
20.1    
20.4    
20.6    
20.9    
21.1    
21.3    
21.6    
21.8    
22.1    
22.3    
22.5    
22.8    
23.0    
23.3    
23.5    
23.7    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.1    
26.4    
26.6    
26.9    
27.1    
27.3    
27.6    
27.8    
28.1    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.7    
30.0    
30.2    
30.5    
30.7    
30.9    
31.2    
31.4    
31.7    
31.9    
32.1    
32.4    
32.6    
32.9    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.6    
39.8    
40.0    
40.3    
40.5    
40.8    
41.0    
41.2    
41.5    
41.7    
42.0    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.6    
43.9    
44.1    
44.4    
44.6    
44.8    
45.1    
45.3    
45.6    
45.8    
46.0    
46.3    
46.5    
46.8    
47.0    
47.2    
47.5    
47.7    
48.0    
48.2    
48.4    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.6    
51.8    
52.0    
52.3    
52.5    
52.8    
53.0    
53.2    
53.5    
53.7    
54.0    
54.2    
54.4    
54.7    
54.9    
55.2    
55.4    
55.6    
55.9    
56.1    
56.4    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.0    
58.3    
58.5    
58.8    
59.0    
59.2    
59.5    
59.7    
60.0    
60.2    
60.4    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.3    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
65.9    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.9    
68.1    
68.3    
68.6    
68.8    
69.1    
69.3    
69.5    
69.8    
70.0    
70.3    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
71.9    
72.2    
72.4    
72.7    
72.9    
73.1    
73.4    
73.6    
73.9    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.3    
76.5    
76.7    
77.0    
77.2    
77.5    
77.7    
77.9    
78.2    
78.4    
78.7    
78.9    
79.1    
79.4    
79.6    
79.9    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.5    
81.8    
82.0    
82.3    
82.5    
82.7    
83.0    
83.2    
83.5    
83.7    
83.9    
84.2    
84.4    
84.7    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.3    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
89.0    
89.2    
89.4    
89.7    
89.9    
90.2    
90.4    
90.6    
90.9    
91.1    
91.4    
91.6    
91.8    
92.1    
92.3    
92.6    
92.8    
93.0    
93.3    
93.5    
93.8    
94.0    
94.2    
94.5    
94.7    
95.0    
95.2    
95.4    
95.7    
95.9    
96.2    
96.4    
96.6    
96.9    
97.1    
97.4    
97.6    
97.8    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 16905, rend_intergenic: 13822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36764, rend_intergenic: 23140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40001, rend_intergenic: 37802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43148, rend_intergenic: 41415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51715, rend_intergenic: 49650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support