-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_3667943-3909498

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.70591_t
Valid prediction for Augustus_model.g27439.t1
Valid prediction for GeneMark_model.70585_t
Valid prediction for GeneMark_model.70581_t
Valid prediction for GeneMark_model.70613_t
Valid prediction for GeneMark_model.70571_t
Valid prediction for Augustus_model.g27451.t1
Valid prediction for Augustus_model.g27445.t1
Valid prediction for Augustus_model.g27441.t1
Valid prediction for GeneMark_model.70579_t
Valid prediction for GeneMark_model.70574_t
Valid prediction for Augustus_model.g27458.t1
Valid prediction for GeneMark_model.70577_t
Valid prediction for snap_scaffold_17-snap.798-T1
Valid prediction for GeneMark_model.70593_t
Couldn't classify 11605, 11820
Sorry, prediction pasa_asmbl_17859.p1 fails validation.
(ATG)	 CG	10644-10937	GT	AGG
(GTT)	 AG	11605-11820	GT	CGG
-recovered pasa_asmbl_17859.p1, initial, 10644, 10937
-recovered pasa_asmbl_17859.p1, internal, 11605, 11820
Valid prediction for Augustus_model.g27460.t1
Valid prediction for GlimmerHMM_glimmerT_40993-T1
Valid prediction for snap_scaffold_17-snap.797-T1
Valid prediction for GlimmerHMM_glimmerT_40982-T1
Valid prediction for GeneMark_model.70624_t
Valid prediction for snap_scaffold_17-snap.792-T1
Valid prediction for GeneMark_model.70599_t
Valid prediction for GeneMark_model.70608_t
Valid prediction for GeneMark_model.70598_t
Couldn't classify 168529, 168686
Couldn't classify 176960, 177044
Sorry, prediction pasa_asmbl_17868.p1 fails validation.
(TCT)	 TC	168529-168686	GT	AAG
(GAA)	 AG	169478-169636	GT	GGG
(CCG)	 AG	169843-169975	GT	AGG
(ACT)	 AG	170193-170369	GT	CGG
(GAT)	 AG	170711-170751	GT	AGG
(GAC)	 AG	171165-171245	GT	AAG
(GCA)	 AG	171361-171430	GT	AGG
(TAC)	 AG	171634-171731	GT	AAG
(GAC)	 AG	172647-172731	GT	TGG
(CAG)	 AG	174507-174647	GT	TGG
(TTT)	 AG	174858-174974	GT	CGG
(TAT)	 AG	176400-176584	GT	AGG
(GCC)	 AG	176960-177044	GT	AGG
add_exon() Sorry, pasa_asmbl_17868.p1 176400-176584-terminal-2 is invalid.
-recovered pasa_asmbl_17868.p1, terminal, 176400, 176584
-recovered pasa_asmbl_17868.p1, internal, 169478, 169636
-recovered pasa_asmbl_17868.p1, internal, 169843, 169975
-recovered pasa_asmbl_17868.p1, internal, 170193, 170369
-recovered pasa_asmbl_17868.p1, internal, 170711, 170751
-recovered pasa_asmbl_17868.p1, internal, 171165, 171245
-recovered pasa_asmbl_17868.p1, internal, 171361, 171430
-recovered pasa_asmbl_17868.p1, internal, 171634, 171731
-recovered pasa_asmbl_17868.p1, internal, 172647, 172731
-recovered pasa_asmbl_17868.p1, internal, 174507, 174647
-recovered pasa_asmbl_17868.p1, internal, 174858, 174974
-recovered pasa_asmbl_17868.p1, internal, 176400, 176584
-recovered pasa_asmbl_17868.p1, internal, 176960, 177044
Valid prediction for GeneMark_model.70628_t
Valid prediction for GlimmerHMM_glimmerT_41002-T1
Valid prediction for GeneMark_model.70595_t
Valid prediction for GeneMark_model.70610_t
Valid prediction for Augustus_model.g27448.t1
Valid prediction for GeneMark_model.70619_t
Valid prediction for GlimmerHMM_glimmerT_40998-T1
Valid prediction for snap_scaffold_17-snap.780-T1
Couldn't classify 125840, 125921
Sorry, prediction pasa_asmbl_17864.p1 fails validation.
(GGT)	 TG	125840-125921	GT	AGG
(GTG)	 AG	127126-127276	GT	AGG
(GTG)	 AG	127376-127442	AG	AAA
-recovered pasa_asmbl_17864.p1, terminal, 127376, 127442
-recovered pasa_asmbl_17864.p1, internal, 127126, 127276
Valid prediction for snap_scaffold_17-snap.784-T1
Valid prediction for Augustus_model.g27444.t1
Valid prediction for GeneMark_model.70626_t
Valid prediction for snap_scaffold_17-snap.804-T1
Valid prediction for Augustus_model.g27453.t1
Valid prediction for snap_scaffold_17-snap.779-T1
Valid prediction for snap_scaffold_17-snap.802-T1
Valid prediction for Augustus_model.g27450.t1
Valid prediction for GeneMark_model.70606_t
Valid prediction for GlimmerHMM_glimmerT_40997-T1
Valid prediction for Augustus_model.g27459.t1
Valid prediction for snap_scaffold_17-snap.799-T1
Valid prediction for snap_scaffold_17-snap.786-T1
Valid prediction for Augustus_model.g27454.t1
Valid prediction for snap_scaffold_17-snap.793-T1
Valid prediction for GlimmerHMM_glimmerT_40987-T1
Valid prediction for GeneMark_model.70575_t
Valid prediction for Augustus_model.g27449.t1
Valid prediction for snap_scaffold_17-snap.794-T1
Valid prediction for snap_scaffold_17-snap.807-T1
Valid prediction for GlimmerHMM_glimmerT_41000-T1
Valid prediction for GlimmerHMM_glimmerT_40983-T1
Valid prediction for GlimmerHMM_glimmerT_40986-T1
Couldn't classify 163120, 163140
Couldn't classify 165939, 166076
Sorry, prediction pasa_asmbl_17867.p1 fails validation.
(CTG)	 AG	163120-163140	GT	AGG
(ATC)	 AG	164175-164324	GT	AGG
(GAA)	 AG	165939-166076	AC	ACA
-recovered pasa_asmbl_17867.p1, internal, 163120, 163140
-recovered pasa_asmbl_17867.p1, internal, 164175, 164324
Valid prediction for snap_scaffold_17-snap.803-T1
Valid prediction for GeneMark_model.70583_t
Valid prediction for snap_scaffold_17-snap.806-T1
Valid prediction for Augustus_model.g27446.t1
Valid prediction for Augustus_model.g27437.t1
Valid prediction for GlimmerHMM_glimmerT_40991-T1
Valid prediction for GeneMark_model.70589_t
Valid prediction for GeneMark_model.70622_t
Valid prediction for snap_scaffold_17-snap.814-T1
Valid prediction for snap_scaffold_17-snap.811-T1
Valid prediction for GeneMark_model.70569_t
Couldn't classify 180484, 180645
Sorry, prediction pasa_asmbl_17873.p1 fails validation.
(CAG)	 AA	180484-180645	GT	AGG
(GAT)	 AG	180960-181106	GT	AGG
(CTA)	 AG	181204-181311	GT	AGG
(GAG)	 AG	181412-181526	GT	TGG
(GAA)	 AG	181632-181756	GT	AGG
(GTA)	 AG	181967-182119	AC	GAA
-recovered pasa_asmbl_17873.p1, terminal, 181967, 182119
-recovered pasa_asmbl_17873.p1, internal, 180960, 181106
-recovered pasa_asmbl_17873.p1, internal, 181204, 181311
-recovered pasa_asmbl_17873.p1, internal, 181412, 181526
-recovered pasa_asmbl_17873.p1, internal, 181632, 181756
Valid prediction for GeneMark_model.70632_t
Valid prediction for GeneMark_model.70587_t
Couldn't classify 15303, 15632
Sorry, prediction pasa_asmbl_17860.p1 fails validation.
(GCG)	 CA	15303-15632	TA	GAT
Valid prediction for GeneMark_model.70630_t
Valid prediction for GlimmerHMM_glimmerT_40988-T1
Valid prediction for snap_scaffold_17-snap.787-T1
Valid prediction for GlimmerHMM_glimmerT_40979-T1
Valid prediction for GlimmerHMM_glimmerT_41005-T1
Valid prediction for snap_scaffold_17-snap.819-T1
Valid prediction for snap_scaffold_17-snap.809-T1
Valid prediction for Augustus_model.g27452.t1
Valid prediction for GeneMark_model.70605_t
Valid prediction for GeneMark_model.70600_t
Valid prediction for GlimmerHMM_glimmerT_41007-T1
Valid prediction for GeneMark_model.70603_t
Valid prediction for GeneMark_model.70564_t
Valid prediction for GlimmerHMM_glimmerT_41006-T1
Valid prediction for snap_scaffold_17-snap.822-T1
Valid prediction for snap_scaffold_17-snap.820-T1
Valid prediction for GeneMark_model.70615_t
Valid prediction for GeneMark_model.70616_t
Valid prediction for GeneMark_model.70567_t
Valid prediction for GeneMark_model.70566_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.70609_t
Valid prediction for snap_scaffold_17-snap.781-T1
Valid prediction for GeneMark_model.70631_t
Valid prediction for GeneMark_model.70565_t
Valid prediction for GeneMark_model.70582_t
Valid prediction for GlimmerHMM_glimmerT_40980-T1
Valid prediction for GeneMark_model.70588_t
Valid prediction for GeneMark_model.70614_t
Valid prediction for snap_scaffold_17-snap.785-T1
Valid prediction for GeneMark_model.70573_t
Valid prediction for GeneMark_model.70570_t
Valid prediction for GeneMark_model.70634_t
Valid prediction for snap_scaffold_17-snap.800-T1
Valid prediction for GeneMark_model.70621_t
Valid prediction for snap_scaffold_17-snap.789-T1
Valid prediction for snap_scaffold_17-snap.801-T1
Valid prediction for GeneMark_model.70611_t
Valid prediction for snap_scaffold_17-snap.816-T1
Valid prediction for GeneMark_model.70596_t
Valid prediction for GeneMark_model.70597_t
Valid prediction for snap_scaffold_17-snap.778-T1
Valid prediction for Augustus_model.g27457.t1
Valid prediction for GeneMark_model.70594_t
Valid prediction for pasa_asmbl_18868.p1
Valid prediction for GlimmerHMM_glimmerT_40989-T1
Valid prediction for GeneMark_model.70601_t
Valid prediction for GlimmerHMM_glimmerT_40992-T1
Valid prediction for GeneMark_model.70635_t
Valid prediction for GeneMark_model.70625_t
Valid prediction for snap_scaffold_17-snap.825-T1
Valid prediction for snap_scaffold_17-snap.821-T1
Valid prediction for GeneMark_model.70602_t
Valid prediction for GeneMark_model.70578_t
Valid prediction for snap_scaffold_17-snap.815-T1
Valid prediction for GeneMark_model.70627_t
Valid prediction for GeneMark_model.70612_t
Valid prediction for Augustus_model.g27438.t1
Valid prediction for snap_scaffold_17-snap.817-T1
Valid prediction for GlimmerHMM_glimmerT_40995-T1
Valid prediction for CodingQuarry_transcript_21893-T1
Valid prediction for GlimmerHMM_glimmerT_40984-T1
Valid prediction for GeneMark_model.70633_t
Valid prediction for GeneMark_model.70604_t
Valid prediction for snap_scaffold_17-snap.824-T1
Valid prediction for snap_scaffold_17-snap.796-T1
Valid prediction for GeneMark_model.70607_t
Valid prediction for GlimmerHMM_glimmerT_40996-T1
Valid prediction for snap_scaffold_17-snap.813-T1
Valid prediction for snap_scaffold_17-snap.823-T1
Valid prediction for GlimmerHMM_glimmerT_40994-T1
Valid prediction for Augustus_model.g27440.t1
Valid prediction for GlimmerHMM_glimmerT_41003-T1
Valid prediction for GeneMark_model.70584_t
Valid prediction for GeneMark_model.70572_t
Valid prediction for GeneMark_model.70623_t
Valid prediction for HiQ_model.g27443.t1
Valid prediction for GlimmerHMM_glimmerT_41004-T1
Valid prediction for snap_scaffold_17-snap.783-T1
Valid prediction for GeneMark_model.70568_t
Valid prediction for GlimmerHMM_glimmerT_41009-T1
Valid prediction for Augustus_model.g27442.t1
Valid prediction for GlimmerHMM_glimmerT_40990-T1
Valid prediction for snap_scaffold_17-snap.795-T1
Valid prediction for snap_scaffold_17-snap.790-T1
Valid prediction for Augustus_model.g27447.t1
Valid prediction for snap_scaffold_17-snap.808-T1
Valid prediction for GeneMark_model.70586_t
Valid prediction for snap_scaffold_17-snap.818-T1
Valid prediction for GlimmerHMM_glimmerT_41008-T1
Valid prediction for snap_scaffold_17-snap.812-T1
Valid prediction for GeneMark_model.70620_t
Valid prediction for GlimmerHMM_glimmerT_41001-T1
Valid prediction for pasa_asmbl_18867.p1
Valid prediction for GeneMark_model.70580_t
Valid prediction for snap_scaffold_17-snap.805-T1
Valid prediction for GlimmerHMM_glimmerT_40999-T1
Valid prediction for GeneMark_model.70617_t
Valid prediction for snap_scaffold_17-snap.791-T1
Valid prediction for GlimmerHMM_glimmerT_40978-T1
Valid prediction for snap_scaffold_17-snap.782-T1
Valid prediction for GeneMark_model.70590_t
Valid prediction for GlimmerHMM_glimmerT_40985-T1
Valid prediction for Augustus_model.g27455.t1
Valid prediction for GlimmerHMM_glimmerT_40981-T1
Valid prediction for snap_scaffold_17-snap.788-T1
Valid prediction for GeneMark_model.70576_t
Couldn't classify 10449, 10613
Couldn't classify 11067, 11225
Sorry, prediction pasa_asmbl_19507.p1 fails validation.
(GAT)	 AT	10449-10613	GT	AGG
(GAT)	 AG	11067-11225	CN	AGC
Valid prediction for GeneMark_model.70629_t
Valid prediction for Augustus_model.g27461.t1
Valid prediction for GeneMark_model.70592_t
Valid prediction for GeneMark_model.70618_t
Valid prediction for Augustus_model.g27456.t1
Valid prediction for snap_scaffold_17-snap.810-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15632, rend_intergenic: 13966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47319, rend_intergenic: 34759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59141, rend_intergenic: 52188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74136, rend_intergenic: 63953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90770, rend_intergenic: 77077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120775, rend_intergenic: 114854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124511, rend_intergenic: 121033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139190, rend_intergenic: 135926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142984, rend_intergenic: 140619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157925, rend_intergenic: 149917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161983, rend_intergenic: 158085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182401, rend_intergenic: 162633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197466, rend_intergenic: 190847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202112, rend_intergenic: 197798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202243, rend_intergenic: 202116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229797, rend_intergenic: 204433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 241556
-exon list size: 867


building trellis

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49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 15632, rend_intergenic: 13966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47319, rend_intergenic: 34759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59141, rend_intergenic: 52188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74136, rend_intergenic: 63953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90770, rend_intergenic: 77077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120775, rend_intergenic: 114854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124511, rend_intergenic: 121033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139190, rend_intergenic: 135926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142984, rend_intergenic: 140619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157925, rend_intergenic: 149917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161983, rend_intergenic: 158085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182401, rend_intergenic: 162633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197466, rend_intergenic: 190847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202112, rend_intergenic: 197798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202243, rend_intergenic: 202116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229797, rend_intergenic: 204433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10643
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 231103 - 241556