-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_195277-386635

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_40476-T1
Valid prediction for snap_scaffold_17-snap.56-T1
Valid prediction for snap_scaffold_17-snap.57-T1
Valid prediction for GeneMark_model.69667_t
Valid prediction for Augustus_model.g27112.t1
Valid prediction for GeneMark_model.69655_t
Valid prediction for snap_scaffold_17-snap.53-T1
Valid prediction for GeneMark_model.69696_t
Valid prediction for GeneMark_model.69679_t
Valid prediction for GeneMark_model.69669_t
Valid prediction for snap_scaffold_17-snap.36-T1
Valid prediction for Augustus_model.g27111.t1
Valid prediction for Augustus_model.g27113.t1
Valid prediction for Augustus_model.g27115.t1
Valid prediction for GlimmerHMM_glimmerT_40469-T1
Valid prediction for GeneMark_model.69689_t
Valid prediction for GlimmerHMM_glimmerT_40468-T1
Valid prediction for GeneMark_model.69659_t
Valid prediction for snap_scaffold_17-snap.44-T1
Valid prediction for snap_scaffold_17-snap.35-T1
Valid prediction for GeneMark_model.69702_t
Valid prediction for Augustus_model.g27114.t1
Valid prediction for snap_scaffold_17-snap.52-T1
Valid prediction for GeneMark_model.69698_t
Valid prediction for snap_scaffold_17-snap.39-T1
Valid prediction for GeneMark_model.69694_t
Valid prediction for GeneMark_model.69665_t
Valid prediction for GlimmerHMM_glimmerT_40470-T1
Valid prediction for snap_scaffold_17-snap.62-T1
Valid prediction for GeneMark_model.69697_t
Valid prediction for snap_scaffold_17-snap.41-T1
Valid prediction for GlimmerHMM_glimmerT_40474-T1
Valid prediction for snap_scaffold_17-snap.49-T1
Valid prediction for GeneMark_model.69673_t
Valid prediction for GeneMark_model.69692_t
Valid prediction for GeneMark_model.69661_t
Valid prediction for GeneMark_model.69663_t
Valid prediction for GeneMark_model.69686_t
Valid prediction for GlimmerHMM_glimmerT_40477-T1
Valid prediction for snap_scaffold_17-snap.58-T1
Valid prediction for GeneMark_model.69675_t
Valid prediction for snap_scaffold_17-snap.51-T1
Valid prediction for snap_scaffold_17-snap.60-T1
Valid prediction for GeneMark_model.69684_t
Valid prediction for GeneMark_model.69704_t
Valid prediction for GlimmerHMM_glimmerT_40472-T1
Valid prediction for GeneMark_model.69672_t
Valid prediction for snap_scaffold_17-snap.47-T1
Valid prediction for snap_scaffold_17-snap.40-T1
Valid prediction for GlimmerHMM_glimmerT_40480-T1
Valid prediction for snap_scaffold_17-snap.34-T1
Valid prediction for GeneMark_model.69657_t
Valid prediction for GeneMark_model.69677_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.69699_t
Valid prediction for snap_scaffold_17-snap.37-T1
Valid prediction for GeneMark_model.69660_t
Valid prediction for GeneMark_model.69654_t
Valid prediction for GlimmerHMM_glimmerT_40467-T1
Valid prediction for GeneMark_model.69695_t
Valid prediction for GeneMark_model.69693_t
Valid prediction for snap_scaffold_17-snap.61-T1
Valid prediction for GlimmerHMM_glimmerT_40475-T1
Valid prediction for GeneMark_model.69662_t
Valid prediction for snap_scaffold_17-snap.45-T1
Valid prediction for snap_scaffold_17-snap.55-T1
Valid prediction for GeneMark_model.69688_t
Valid prediction for GeneMark_model.69685_t
Valid prediction for GlimmerHMM_glimmerT_40479-T1
Valid prediction for GeneMark_model.69671_t
Valid prediction for GeneMark_model.69678_t
Valid prediction for snap_scaffold_17-snap.42-T1
Valid prediction for GeneMark_model.69700_t
Valid prediction for snap_scaffold_17-snap.59-T1
Valid prediction for GlimmerHMM_glimmerT_40473-T1
Valid prediction for GeneMark_model.69664_t
Valid prediction for GeneMark_model.69670_t
Valid prediction for snap_scaffold_17-snap.54-T1
Valid prediction for GeneMark_model.69683_t
Valid prediction for GeneMark_model.69658_t
Valid prediction for GeneMark_model.69656_t
Valid prediction for snap_scaffold_17-snap.46-T1
Valid prediction for GlimmerHMM_glimmerT_40471-T1
Valid prediction for GeneMark_model.69680_t
Valid prediction for GeneMark_model.69703_t
Valid prediction for GeneMark_model.69681_t
Valid prediction for GeneMark_model.69674_t
Valid prediction for snap_scaffold_17-snap.50-T1
Valid prediction for GeneMark_model.69691_t
Valid prediction for snap_scaffold_17-snap.48-T1
Valid prediction for GeneMark_model.69682_t
Valid prediction for GlimmerHMM_glimmerT_40478-T1
Valid prediction for GeneMark_model.69666_t
Valid prediction for GeneMark_model.69701_t
Valid prediction for snap_scaffold_17-snap.38-T1
Valid prediction for snap_scaffold_17-snap.43-T1
Valid prediction for GeneMark_model.69668_t
Valid prediction for GeneMark_model.69690_t
Valid prediction for GeneMark_model.69676_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 56435, rend_intergenic: 32241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75043, rend_intergenic: 67870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76411, rend_intergenic: 75811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87882, rend_intergenic: 76811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96115, rend_intergenic: 94940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130613, rend_intergenic: 124898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 191359
-exon list size: 515


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.2    
1.4    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.9    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
4.3    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.6    
6.8    
7.0    
7.2    
7.4    
7.5    
7.7    
7.9    
8.1    
8.3    
8.5    
8.7    
8.9    
9.1    
9.3    
9.5    
9.7    
9.9    
10.1    
10.3    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
13.2    
13.3    
13.5    
13.7    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.2    
16.4    
16.6    
16.8    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
19.0    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.7    
21.9    
22.1    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.7    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.8    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.5    
48.7    
48.9    
49.1    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.9    
51.1    
51.3    
51.5    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 56435, rend_intergenic: 32241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75043, rend_intergenic: 67870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76411, rend_intergenic: 75811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87882, rend_intergenic: 76811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96115, rend_intergenic: 94940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130613, rend_intergenic: 124898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23036
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 21720
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11606
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 11668 - 21720
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 174712 - 191359
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support