-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_12717630-12975206

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.72929_t
Valid prediction for GeneMark_model.72913_t
Valid prediction for snap_scaffold_17-snap.2627-T1
Valid prediction for snap_scaffold_17-snap.2629-T1
Valid prediction for GlimmerHMM_glimmerT_42236-T1
Valid prediction for GeneMark_model.73004_t
Valid prediction for snap_scaffold_17-snap.2666-T1
Valid prediction for Augustus_model.g28271.t1
Valid prediction for GeneMark_model.72959_t
Valid prediction for GeneMark_model.72928_t
Valid prediction for GeneMark_model.72974_t
Valid prediction for GeneMark_model.72917_t
Valid prediction for GeneMark_model.72905_t
Valid prediction for snap_scaffold_17-snap.2649-T1
Valid prediction for Augustus_model.g28279.t1
Valid prediction for snap_scaffold_17-snap.2642-T1
Valid prediction for GeneMark_model.73005_t
Valid prediction for snap_scaffold_17-snap.2637-T1
Valid prediction for snap_scaffold_17-snap.2618-T1
Valid prediction for snap_scaffold_17-snap.2631-T1
Valid prediction for GeneMark_model.72946_t
Valid prediction for GlimmerHMM_glimmerT_42232-T1
Valid prediction for GeneMark_model.72964_t
Valid prediction for GeneMark_model.73002_t
Valid prediction for GlimmerHMM_glimmerT_42229-T1
Valid prediction for GeneMark_model.72994_t
Valid prediction for GeneMark_model.72987_t
Valid prediction for GeneMark_model.72935_t
Valid prediction for GeneMark_model.73000_t
Valid prediction for GlimmerHMM_glimmerT_42239-T1
Couldn't classify 94571, 94719
Couldn't classify 100893, 101033
Sorry, prediction pasa_asmbl_18413.p1 fails validation.
(GAG)	 CA	94571-94719	GT	TGG
(GAG)	 AG	95074-95264	GT	CAG
(CCT)	 AG	98052-98566	GT	AGG
(GAG)	 AG	99611-99862	GT	AGG
(GTG)	 AG	100893-101033	GG	GAG
-recovered pasa_asmbl_18413.p1, internal, 95074, 95264
-recovered pasa_asmbl_18413.p1, internal, 98052, 98566
-recovered pasa_asmbl_18413.p1, internal, 99611, 99862
Valid prediction for GeneMark_model.72956_t
Valid prediction for Augustus_model.g28280.t1
Valid prediction for Augustus_model.g28276.t1
Valid prediction for Augustus_model.g28272.t1
Valid prediction for GeneMark_model.72920_t
Valid prediction for GeneMark_model.72978_t
Valid prediction for snap_scaffold_17-snap.2621-T1
Valid prediction for GlimmerHMM_glimmerT_42233-T1
Valid prediction for Augustus_model.g28278.t1
Valid prediction for snap_scaffold_17-snap.2614-T1
Valid prediction for GeneMark_model.72965_t
Valid prediction for snap_scaffold_17-snap.2658-T1
Valid prediction for snap_scaffold_17-snap.2624-T1
Valid prediction for GeneMark_model.72957_t
Valid prediction for GeneMark_model.72939_t
Valid prediction for Augustus_model.g28274.t1
Valid prediction for GlimmerHMM_glimmerT_42234-T1
Valid prediction for GeneMark_model.72996_t
Valid prediction for GeneMark_model.72985_t
Valid prediction for snap_scaffold_17-snap.2661-T1
Valid prediction for GlimmerHMM_glimmerT_42225-T1
Valid prediction for snap_scaffold_17-snap.2664-T1
Valid prediction for snap_scaffold_17-snap.2655-T1
Valid prediction for GlimmerHMM_glimmerT_42218-T1
Valid prediction for snap_scaffold_17-snap.2656-T1
Valid prediction for snap_scaffold_17-snap.2633-T1
Valid prediction for GeneMark_model.72976_t
Valid prediction for GeneMark_model.72927_t
Couldn't classify 108557, 108682
Sorry, prediction pasa_asmbl_18414.p1 fails validation.
(GAG)	 CA	108557-108682	GT	CGG
(GGC)	 AG	109991-110173	GC	GAG
-recovered pasa_asmbl_18414.p1, terminal, 109991, 110173
-recovered pasa_asmbl_18414.p1, internal, 109991, 110173
Valid prediction for Augustus_model.g28281.t1
Valid prediction for GeneMark_model.72989_t
Valid prediction for Augustus_model.g28270.t1
Valid prediction for GeneMark_model.72952_t
Valid prediction for Augustus_model.g28275.t1
Valid prediction for GeneMark_model.72951_t
Valid prediction for GeneMark_model.72991_t
Valid prediction for GeneMark_model.72972_t
Valid prediction for snap_scaffold_17-snap.2641-T1
Valid prediction for GeneMark_model.72968_t
Valid prediction for GeneMark_model.72931_t
Valid prediction for CodingQuarry_transcript_22174-T1
Valid prediction for GeneMark_model.72925_t
Valid prediction for GeneMark_model.72923_t
Valid prediction for GlimmerHMM_glimmerT_42214-T1
Valid prediction for GeneMark_model.73007_t
Valid prediction for GeneMark_model.72954_t
Valid prediction for GlimmerHMM_glimmerT_42221-T1
Valid prediction for snap_scaffold_17-snap.2639-T1
Valid prediction for Augustus_model.g28277.t1
Valid prediction for snap_scaffold_17-snap.2662-T1
Valid prediction for GeneMark_model.72983_t
Valid prediction for snap_scaffold_17-snap.2645-T1
Valid prediction for GeneMark_model.72962_t
Valid prediction for GeneMark_model.72910_t
Valid prediction for snap_scaffold_17-snap.2652-T1
Valid prediction for snap_scaffold_17-snap.2635-T1
Valid prediction for GeneMark_model.72980_t
Valid prediction for GeneMark_model.72945_t
Valid prediction for GlimmerHMM_glimmerT_42223-T1
Valid prediction for GeneMark_model.72907_t
Valid prediction for GeneMark_model.72970_t
Valid prediction for GeneMark_model.72993_t
Valid prediction for GlimmerHMM_glimmerT_42226-T1
Valid prediction for GeneMark_model.72967_t
Valid prediction for snap_scaffold_17-snap.2617-T1
Valid prediction for GlimmerHMM_glimmerT_42213-T1
Valid prediction for GeneMark_model.72950_t
Valid prediction for GeneMark_model.72998_t
Couldn't classify 111152, 111412
Sorry, prediction pasa_asmbl_18416.p1 fails validation.
(ATC)	 AG	111152-111412	GT	AGG
(GGC)	 AG	111518-111772	GT	AAG
-recovered pasa_asmbl_18416.p1, terminal, 111518, 111772
-recovered pasa_asmbl_18416.p1, internal, 111152, 111412
-recovered pasa_asmbl_18416.p1, internal, 111518, 111772
Valid prediction for GeneMark_model.72960_t
Valid prediction for GeneMark_model.72942_t
Valid prediction for GlimmerHMM_glimmerT_42219-T1
Valid prediction for GlimmerHMM_glimmerT_42216-T1
Valid prediction for GlimmerHMM_glimmerT_42231-T1
Valid prediction for GeneMark_model.72937_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_42215-T1
Valid prediction for GlimmerHMM_glimmerT_42237-T1
Valid prediction for snap_scaffold_17-snap.2648-T1
Valid prediction for GeneMark_model.72955_t
Valid prediction for snap_scaffold_17-snap.2647-T1
Valid prediction for snap_scaffold_17-snap.2650-T1
Valid prediction for GeneMark_model.72947_t
Valid prediction for GeneMark_model.72934_t
Valid prediction for snap_scaffold_17-snap.2644-T1
Valid prediction for GlimmerHMM_glimmerT_42220-T1
Valid prediction for GeneMark_model.72941_t
Valid prediction for GlimmerHMM_glimmerT_42230-T1
Valid prediction for snap_scaffold_17-snap.2634-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2638-T1
Valid prediction for GlimmerHMM_glimmerT_42235-T1
Valid prediction for snap_scaffold_17-snap.2646-T1
Valid prediction for GlimmerHMM_glimmerT_42240-T1
Valid prediction for GeneMark_model.72936_t
Valid prediction for snap_scaffold_17-snap.2632-T1
Valid prediction for GeneMark_model.72921_t
Valid prediction for GeneMark_model.72922_t
Valid prediction for Augustus_model.g28285.t1
Valid prediction for GeneMark_model.72930_t
Valid prediction for GeneMark_model.72904_t
Valid prediction for snap_scaffold_17-snap.2623-T1
Valid prediction for GlimmerHMM_glimmerT_42217-T1
Valid prediction for GeneMark_model.72990_t
Valid prediction for GeneMark_model.72924_t
Valid prediction for snap_scaffold_17-snap.2659-T1
Valid prediction for snap_scaffold_17-snap.2622-T1
Valid prediction for Augustus_model.g28269.t1
Valid prediction for GlimmerHMM_glimmerT_42224-T1
Valid prediction for GeneMark_model.72982_t
Valid prediction for snap_scaffold_17-snap.2625-T1
Valid prediction for Augustus_model.g28284.t1
Valid prediction for GlimmerHMM_glimmerT_42210-T1
Valid prediction for snap_scaffold_17-snap.2636-T1
Valid prediction for snap_scaffold_17-snap.2654-T1
Valid prediction for GeneMark_model.72975_t
Valid prediction for GeneMark_model.72906_t
Valid prediction for GeneMark_model.73001_t
Valid prediction for GeneMark_model.72940_t
Valid prediction for GeneMark_model.72958_t
Valid prediction for GeneMark_model.72966_t
Valid prediction for GeneMark_model.72969_t
Valid prediction for GeneMark_model.72911_t
Valid prediction for GeneMark_model.72944_t
Valid prediction for GeneMark_model.72981_t
Valid prediction for GeneMark_model.72961_t
Valid prediction for snap_scaffold_17-snap.2616-T1
Valid prediction for GeneMark_model.72926_t
Valid prediction for snap_scaffold_17-snap.2630-T1
Valid prediction for snap_scaffold_17-snap.2626-T1
Valid prediction for GeneMark_model.72915_t
Valid prediction for GeneMark_model.72943_t
Valid prediction for Augustus_model.g28283.t1
Valid prediction for GeneMark_model.72918_t
Valid prediction for GeneMark_model.72973_t
Valid prediction for snap_scaffold_17-snap.2615-T1
Valid prediction for snap_scaffold_17-snap.2657-T1
Valid prediction for GlimmerHMM_glimmerT_42228-T1
Valid prediction for GlimmerHMM_glimmerT_42238-T1
Valid prediction for snap_scaffold_17-snap.2620-T1
Valid prediction for snap_scaffold_17-snap.2640-T1
Valid prediction for GeneMark_model.72979_t
Valid prediction for GlimmerHMM_glimmerT_42227-T1
Valid prediction for snap_scaffold_17-snap.2663-T1
Valid prediction for GeneMark_model.72949_t
Valid prediction for GeneMark_model.72971_t
Valid prediction for GeneMark_model.72995_t
Valid prediction for snap_scaffold_17-snap.2628-T1
Valid prediction for Augustus_model.g28282.t1
Valid prediction for snap_scaffold_17-snap.2667-T1
Valid prediction for GeneMark_model.72977_t
Valid prediction for snap_scaffold_17-snap.2660-T1
Valid prediction for GeneMark_model.73003_t
Valid prediction for GlimmerHMM_glimmerT_42211-T1
Valid prediction for GeneMark_model.72999_t
Valid prediction for GeneMark_model.72953_t
Valid prediction for snap_scaffold_17-snap.2643-T1
Valid prediction for GeneMark_model.72909_t
Valid prediction for GeneMark_model.72938_t
Valid prediction for GeneMark_model.72914_t
Valid prediction for snap_scaffold_17-snap.2619-T1
Valid prediction for GeneMark_model.72984_t
Valid prediction for GeneMark_model.72992_t
Valid prediction for GeneMark_model.72916_t
Valid prediction for GeneMark_model.72933_t
Valid prediction for GeneMark_model.72948_t
Valid prediction for GlimmerHMM_glimmerT_42212-T1
Valid prediction for Augustus_model.g28273.t1
Valid prediction for GeneMark_model.72912_t
Valid prediction for GeneMark_model.72908_t
Valid prediction for GeneMark_model.72919_t
Valid prediction for GeneMark_model.72963_t
Valid prediction for GeneMark_model.73006_t
Valid prediction for GeneMark_model.72997_t
Valid prediction for GeneMark_model.72932_t
Valid prediction for GlimmerHMM_glimmerT_42222-T1
Valid prediction for snap_scaffold_17-snap.2653-T1
Valid prediction for GeneMark_model.72988_t
Valid prediction for snap_scaffold_17-snap.2651-T1
Valid prediction for snap_scaffold_17-snap.2665-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10930, rend_intergenic: 1744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27036, rend_intergenic: 11673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52552, rend_intergenic: 28050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52935, rend_intergenic: 52802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56245, rend_intergenic: 53341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61915, rend_intergenic: 56282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64174, rend_intergenic: 63229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75877, rend_intergenic: 75511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78889, rend_intergenic: 76001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82630, rend_intergenic: 78939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89561, rend_intergenic: 84597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98660, rend_intergenic: 94378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106583, rend_intergenic: 100078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110173, rend_intergenic: 108440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113594, rend_intergenic: 110741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132665, rend_intergenic: 125334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142683, rend_intergenic: 137212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157349, rend_intergenic: 154965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162354, rend_intergenic: 157461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164180, rend_intergenic: 163274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178594, rend_intergenic: 164321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186012, rend_intergenic: 178644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197854, rend_intergenic: 195709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199638, rend_intergenic: 198447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220815, rend_intergenic: 202424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225707, rend_intergenic: 220829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232404, rend_intergenic: 227241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236966, rend_intergenic: 232955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 257577
-exon list size: 1240


building trellis

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34.2    
34.3    
34.4    
34.5    
34.5    
34.6    
34.7    
34.8    
34.9    
34.9    
35.0    
35.1    
35.2    
35.3    
35.3    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.2    
36.3    
36.4    
36.5    
36.6    
36.6    
36.7    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.3    
37.4    
37.4    
37.5    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.1    
38.2    
38.2    
38.3    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.5    
39.6    
39.7    
39.8    
39.9    
39.9    
40.0    
40.1    
40.2    
40.3    
40.3    
40.4    
40.5    
40.6    
40.7    
40.7    
40.8    
40.9    
41.0    
41.1    
41.1    
41.2    
41.3    
41.4    
41.5    
41.5    
41.6    
41.7    
41.8    
41.9    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.4    
42.5    
42.6    
42.7    
42.8    
42.8    
42.9    
43.0    
43.1    
43.2    
43.2    
43.3    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.9    
44.0    
44.0    
44.1    
44.2    
44.3    
44.4    
44.4    
44.5    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.1    
46.1    
46.2    
46.3    
46.4    
46.5    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.3    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.6    
48.7    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.7    
49.8    
49.8    
49.9    
50.0    
50.1    
50.2    
50.2    
50.3    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.3    
51.4    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.7    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.5    
53.6    
53.7    
53.8    
53.9    
53.9    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.5    
55.6    
55.6    
55.7    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.7    
56.8    
56.8    
56.9    
57.0    
57.1    
57.2    
57.2    
57.3    
57.4    
57.5    
57.6    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.1    
58.2    
58.3    
58.4    
58.5    
58.5    
58.6    
58.7    
58.8    
58.9    
58.9    
59.0    
59.1    
59.2    
59.3    
59.3    
59.4    
59.5    
59.6    
59.7    
59.7    
59.8    
59.9    
60.0    
60.1    
60.1    
60.2    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.7    
61.8    
61.8    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.3    
63.4    
63.4    
63.5    
63.6    
63.7    
63.8    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.7    
64.8    
64.9    
65.0    
65.1    
65.1    
65.2    
65.3    
65.4    
65.5    
65.5    
65.6    
65.7    
65.8    
65.9    
65.9    
66.0    
66.1    
66.2    
66.3    
66.3    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.1    
69.2    
69.2    
69.3    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.5    
70.6    
70.7    
70.8    
70.9    
70.9    
71.0    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.6    
71.7    
71.7    
71.8    
71.9    
72.0    
72.1    
72.1    
72.2    
72.3    
72.4    
72.5    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.2    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.8    
75.9    
76.0    
76.1    
76.2    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.8    
77.9    
77.9    
78.0    
78.1    
78.2    
78.3    
78.3    
78.4    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.0    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.8    
80.9    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.9    
82.0    
82.0    
82.1    
82.2    
82.3    
82.4    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.4    
84.5    
84.5    
84.6    
84.7    
84.8    
84.9    
84.9    
85.0    
85.1    
85.2    
85.3    
85.3    
85.4    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.2    
86.3    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.3    
87.4    
87.4    
87.5    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.1    
88.2    
88.2    
88.3    
88.4    
88.5    
88.6    
88.6    
88.7    
88.8    
88.9    
89.0    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.2    
90.3    
90.3    
90.4    
90.5    
90.6    
90.7    
90.7    
90.8    
90.9    
91.0    
91.1    
91.1    
91.2    
91.3    
91.4    
91.5    
91.5    
91.6    
91.7    
91.8    
91.9    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.4    
92.5    
92.6    
92.7    
92.8    
92.8    
92.9    
93.0    
93.1    
93.2    
93.2    
93.3    
93.4    
93.5    
93.6    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.4    
94.4    
94.5    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.6    
97.7    
97.7    
97.8    
97.9    
98.0    
98.1    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.9    
99.0    
99.0    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 72 predictions from path traversal
Error with prediction: snap lend_intergenic: 10930, rend_intergenic: 1744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27036, rend_intergenic: 11673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52552, rend_intergenic: 28050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52935, rend_intergenic: 52802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56245, rend_intergenic: 53341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61915, rend_intergenic: 56282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64174, rend_intergenic: 63229  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75877, rend_intergenic: 75511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78889, rend_intergenic: 76001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82630, rend_intergenic: 78939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89561, rend_intergenic: 84597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98660, rend_intergenic: 94378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106583, rend_intergenic: 100078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110173, rend_intergenic: 108440  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113594, rend_intergenic: 110741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132665, rend_intergenic: 125334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142683, rend_intergenic: 137212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157349, rend_intergenic: 154965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162354, rend_intergenic: 157461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164180, rend_intergenic: 163274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178594, rend_intergenic: 164321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186012, rend_intergenic: 178644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197854, rend_intergenic: 195709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199638, rend_intergenic: 198447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220815, rend_intergenic: 202424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225707, rend_intergenic: 220829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232404, rend_intergenic: 227241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236966, rend_intergenic: 232955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 243722 - 257577
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 245606 - 257577
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 245673 - 257577
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support