-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_12426197-12719372

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.72882_t
Valid prediction for GeneMark_model.72798_t
Valid prediction for GeneMark_model.72861_t
Valid prediction for GeneMark_model.72786_t
Valid prediction for snap_scaffold_17-snap.2557-T1
Valid prediction for GeneMark_model.72790_t
Valid prediction for Augustus_model.g28266.t1
Valid prediction for GlimmerHMM_glimmerT_42174-T1
Valid prediction for GeneMark_model.72808_t
Valid prediction for GeneMark_model.72871_t
Valid prediction for GeneMark_model.72831_t
Valid prediction for GeneMark_model.72892_t
Valid prediction for Augustus_model.g28267.t1
Valid prediction for GeneMark_model.72830_t
Valid prediction for snap_scaffold_17-snap.2563-T1
Valid prediction for snap_scaffold_17-snap.2555-T1
Valid prediction for snap_scaffold_17-snap.2573-T1
Valid prediction for GeneMark_model.72801_t
Valid prediction for snap_scaffold_17-snap.2581-T1
Valid prediction for snap_scaffold_17-snap.2552-T1
Valid prediction for snap_scaffold_17-snap.2569-T1
Valid prediction for snap_scaffold_17-snap.2570-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2551-T1
Valid prediction for snap_scaffold_17-snap.2602-T1
Valid prediction for Augustus_model.g28259.t1
Valid prediction for GeneMark_model.72854_t
Valid prediction for GlimmerHMM_glimmerT_42205-T1
Valid prediction for GeneMark_model.72867_t
Valid prediction for GlimmerHMM_glimmerT_42194-T1
Valid prediction for GlimmerHMM_glimmerT_42208-T1
Valid prediction for GeneMark_model.72903_t
Valid prediction for GeneMark_model.72834_t
Valid prediction for snap_scaffold_17-snap.2592-T1
Valid prediction for GeneMark_model.72865_t
Valid prediction for GeneMark_model.72890_t
Valid prediction for Augustus_model.g28257.t1
Valid prediction for snap_scaffold_17-snap.2607-T1
Valid prediction for GeneMark_model.72842_t
Valid prediction for GeneMark_model.72824_t
Valid prediction for GlimmerHMM_glimmerT_42207-T1
Valid prediction for GeneMark_model.72880_t
Valid prediction for GeneMark_model.72870_t
Valid prediction for GeneMark_model.72858_t
Valid prediction for GeneMark_model.72888_t
Valid prediction for GeneMark_model.72799_t
Valid prediction for GeneMark_model.72818_t
Valid prediction for GeneMark_model.72856_t
Valid prediction for GeneMark_model.72805_t
Valid prediction for GeneMark_model.72850_t
Valid prediction for snap_scaffold_17-snap.2575-T1
Valid prediction for GeneMark_model.72877_t
Valid prediction for GeneMark_model.72852_t
Valid prediction for GeneMark_model.72886_t
Valid prediction for GeneMark_model.72885_t
Valid prediction for GlimmerHMM_glimmerT_42185-T1
Valid prediction for GeneMark_model.72812_t
Valid prediction for snap_scaffold_17-snap.2606-T1
Valid prediction for GeneMark_model.72838_t
Valid prediction for GeneMark_model.72825_t
Valid prediction for Augustus_model.g28268.t1
Valid prediction for Augustus_model.g28258.t1
Valid prediction for GlimmerHMM_glimmerT_42200-T1
Valid prediction for snap_scaffold_17-snap.2587-T1
Valid prediction for GeneMark_model.72794_t
Valid prediction for GeneMark_model.72873_t
Valid prediction for Augustus_model.g28261.t1
Valid prediction for GeneMark_model.72803_t
Valid prediction for snap_scaffold_17-snap.2564-T1
Valid prediction for snap_scaffold_17-snap.2605-T1
Valid prediction for GeneMark_model.72840_t
Valid prediction for snap_scaffold_17-snap.2566-T1
Valid prediction for GeneMark_model.72875_t
Valid prediction for GlimmerHMM_glimmerT_42181-T1
Valid prediction for snap_scaffold_17-snap.2577-T1
Valid prediction for snap_scaffold_17-snap.2580-T1
Valid prediction for GeneMark_model.72792_t
Valid prediction for GeneMark_model.72782_t
Valid prediction for GeneMark_model.72814_t
Valid prediction for GeneMark_model.72900_t
Valid prediction for snap_scaffold_17-snap.2603-T1
Valid prediction for GlimmerHMM_glimmerT_42199-T1
Valid prediction for snap_scaffold_17-snap.2594-T1
Valid prediction for GeneMark_model.72816_t
Valid prediction for snap_scaffold_17-snap.2560-T1
Valid prediction for snap_scaffold_17-snap.2612-T1
Valid prediction for GlimmerHMM_glimmerT_42203-T1
Valid prediction for GeneMark_model.72893_t
Valid prediction for GeneMark_model.72883_t
Valid prediction for GeneMark_model.72863_t
Valid prediction for GeneMark_model.72789_t
Valid prediction for snap_scaffold_17-snap.2559-T1
Valid prediction for snap_scaffold_17-snap.2595-T1
Valid prediction for snap_scaffold_17-snap.2597-T1
Valid prediction for GeneMark_model.72898_t
Valid prediction for GeneMark_model.72829_t
Valid prediction for snap_scaffold_17-snap.2565-T1
Valid prediction for GeneMark_model.72902_t
Valid prediction for GeneMark_model.72827_t
Valid prediction for GeneMark_model.72895_t
Valid prediction for GeneMark_model.72846_t
Valid prediction for GlimmerHMM_glimmerT_42178-T1
Valid prediction for GlimmerHMM_glimmerT_42186-T1
Valid prediction for GeneMark_model.72822_t
Valid prediction for snap_scaffold_17-snap.2610-T1
Valid prediction for GeneMark_model.72841_t
Valid prediction for GeneMark_model.72784_t
Valid prediction for GeneMark_model.72813_t
Valid prediction for GeneMark_model.72796_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.72879_t
Valid prediction for GlimmerHMM_glimmerT_42175-T1
Valid prediction for GeneMark_model.72872_t
Valid prediction for GeneMark_model.72849_t
Valid prediction for snap_scaffold_17-snap.2578-T1
Valid prediction for snap_scaffold_17-snap.2582-T1
Valid prediction for GeneMark_model.72839_t
Valid prediction for GeneMark_model.72832_t
Valid prediction for snap_scaffold_17-snap.2591-T1
Valid prediction for GlimmerHMM_glimmerT_42193-T1
Valid prediction for GeneMark_model.72864_t
Valid prediction for GlimmerHMM_glimmerT_42198-T1
Valid prediction for GeneMark_model.72817_t
Valid prediction for Augustus_model.g28260.t1
Valid prediction for GeneMark_model.72887_t
Valid prediction for GeneMark_model.72797_t
Valid prediction for GeneMark_model.72897_t
Valid prediction for snap_scaffold_17-snap.2599-T1
Valid prediction for GeneMark_model.72793_t
Valid prediction for GeneMark_model.72851_t
Valid prediction for GeneMark_model.72809_t
Valid prediction for snap_scaffold_17-snap.2567-T1
Valid prediction for snap_scaffold_17-snap.2558-T1
Valid prediction for GeneMark_model.72868_t
Valid prediction for GeneMark_model.72891_t
Valid prediction for snap_scaffold_17-snap.2600-T1
Valid prediction for snap_scaffold_17-snap.2590-T1
Valid prediction for GeneMark_model.72899_t
Valid prediction for GeneMark_model.72862_t
Valid prediction for snap_scaffold_17-snap.2596-T1
Valid prediction for Augustus_model.g28262.t1
Valid prediction for Augustus_model.g28263.t1
Valid prediction for snap_scaffold_17-snap.2568-T1
Valid prediction for snap_scaffold_17-snap.2572-T1
Valid prediction for GeneMark_model.72781_t
Valid prediction for GlimmerHMM_glimmerT_42177-T1
Valid prediction for snap_scaffold_17-snap.2598-T1
Valid prediction for GeneMark_model.72806_t
Valid prediction for GeneMark_model.72810_t
Valid prediction for snap_scaffold_17-snap.2584-T1
Valid prediction for snap_scaffold_17-snap.2604-T1
Valid prediction for snap_scaffold_17-snap.2593-T1
Valid prediction for GeneMark_model.72878_t
Valid prediction for GeneMark_model.72807_t
Valid prediction for GeneMark_model.72855_t
Valid prediction for GlimmerHMM_glimmerT_42192-T1
Valid prediction for GeneMark_model.72783_t
Valid prediction for GlimmerHMM_glimmerT_42201-T1
Valid prediction for GeneMark_model.72853_t
Valid prediction for snap_scaffold_17-snap.2574-T1
Valid prediction for GeneMark_model.72876_t
Valid prediction for GeneMark_model.72881_t
Valid prediction for GeneMark_model.72788_t
Valid prediction for GlimmerHMM_glimmerT_42179-T1
Valid prediction for snap_scaffold_17-snap.2588-T1
Valid prediction for GlimmerHMM_glimmerT_42189-T1
Valid prediction for snap_scaffold_17-snap.2561-T1
Valid prediction for snap_scaffold_17-snap.2556-T1
Valid prediction for GlimmerHMM_glimmerT_42190-T1
Valid prediction for GlimmerHMM_glimmerT_42191-T1
Valid prediction for GeneMark_model.72821_t
Valid prediction for GlimmerHMM_glimmerT_42176-T1
Valid prediction for GeneMark_model.72869_t
Valid prediction for GeneMark_model.72823_t
Valid prediction for Augustus_model.g28265.t1
Valid prediction for GeneMark_model.72833_t
Valid prediction for GeneMark_model.72819_t
Valid prediction for GeneMark_model.72901_t
Valid prediction for GlimmerHMM_glimmerT_42206-T1
Valid prediction for snap_scaffold_17-snap.2571-T1
Valid prediction for GlimmerHMM_glimmerT_42182-T1
Valid prediction for GeneMark_model.72889_t
Valid prediction for GeneMark_model.72815_t
Valid prediction for GeneMark_model.72896_t
Valid prediction for Augustus_model.g28264.t1
Valid prediction for GlimmerHMM_glimmerT_42188-T1
Valid prediction for snap_scaffold_17-snap.2554-T1
Valid prediction for GlimmerHMM_glimmerT_42180-T1
Valid prediction for GlimmerHMM_glimmerT_42204-T1
Valid prediction for GeneMark_model.72837_t
Valid prediction for snap_scaffold_17-snap.2613-T1
Valid prediction for snap_scaffold_17-snap.2583-T1
Valid prediction for snap_scaffold_17-snap.2553-T1
Valid prediction for snap_scaffold_17-snap.2608-T1
Valid prediction for GeneMark_model.72811_t
Valid prediction for GeneMark_model.72847_t
Valid prediction for GeneMark_model.72787_t
Valid prediction for GlimmerHMM_glimmerT_42196-T1
Valid prediction for GeneMark_model.72804_t
Valid prediction for GlimmerHMM_glimmerT_42183-T1
Valid prediction for GeneMark_model.72884_t
Valid prediction for snap_scaffold_17-snap.2601-T1
Valid prediction for snap_scaffold_17-snap.2576-T1
Valid prediction for GeneMark_model.72843_t
Valid prediction for snap_scaffold_17-snap.2579-T1
Valid prediction for GeneMark_model.72791_t
Valid prediction for snap_scaffold_17-snap.2611-T1
Valid prediction for snap_scaffold_17-snap.2585-T1
Valid prediction for GeneMark_model.72866_t
Valid prediction for GlimmerHMM_glimmerT_42184-T1
Valid prediction for snap_scaffold_17-snap.2562-T1
Valid prediction for GeneMark_model.72857_t
Valid prediction for GlimmerHMM_glimmerT_42187-T1
Valid prediction for GeneMark_model.72802_t
Valid prediction for GeneMark_model.72826_t
Valid prediction for GeneMark_model.72859_t
Valid prediction for GeneMark_model.72848_t
Valid prediction for snap_scaffold_17-snap.2609-T1
Valid prediction for GlimmerHMM_glimmerT_42195-T1
Valid prediction for GeneMark_model.72845_t
Valid prediction for snap_scaffold_17-snap.2586-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.72835_t
Valid prediction for GlimmerHMM_glimmerT_42197-T1
Valid prediction for snap_scaffold_17-snap.2589-T1
Valid prediction for GeneMark_model.72844_t
Valid prediction for GeneMark_model.72800_t
Valid prediction for GlimmerHMM_glimmerT_42202-T1
Valid prediction for GeneMark_model.72874_t
Valid prediction for GeneMark_model.72785_t
Valid prediction for GeneMark_model.72860_t
Valid prediction for GeneMark_model.72894_t
Valid prediction for GeneMark_model.72795_t
Valid prediction for GeneMark_model.72828_t
Valid prediction for snap_scaffold_17-snap.2550-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 85465, rend_intergenic: 85462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 229434, rend_intergenic: 229431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13416, rend_intergenic: 8537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17309, rend_intergenic: 14642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22222, rend_intergenic: 19950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25171, rend_intergenic: 23806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30617, rend_intergenic: 29136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33072, rend_intergenic: 30636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39751, rend_intergenic: 33110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53378, rend_intergenic: 41707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61605, rend_intergenic: 53734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68613, rend_intergenic: 64580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86510, rend_intergenic: 81554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88460, rend_intergenic: 86536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92292, rend_intergenic: 91053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93933, rend_intergenic: 92730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116860, rend_intergenic: 97331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121271, rend_intergenic: 116890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148198, rend_intergenic: 122579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149310, rend_intergenic: 148490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161511, rend_intergenic: 151239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168836, rend_intergenic: 166082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187185, rend_intergenic: 169622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187669, rend_intergenic: 187215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207022, rend_intergenic: 187711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222590, rend_intergenic: 207041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237879, rend_intergenic: 224067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249242, rend_intergenic: 238237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254130, rend_intergenic: 249514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265670, rend_intergenic: 259457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 273695, rend_intergenic: 266779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 287988, rend_intergenic: 279305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289491, rend_intergenic: 288004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 293176
-exon list size: 1528


building trellis

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25.6    
25.7    
25.8    
25.8    
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25.9    
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26.1    
26.1    
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26.3    
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26.9    
27.0    
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27.1    
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27.4    
27.5    
27.5    
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27.8    
27.8    
27.9    
28.0    
28.0    
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28.8    
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29.0    
29.0    
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29.3    
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29.4    
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29.6    
29.7    
29.7    
29.8    
29.9    
29.9    
30.0    
30.1    
30.1    
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30.3    
30.3    
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30.6    
30.7    
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30.8    
30.8    
30.9    
31.0    
31.0    
31.1    
31.2    
31.2    
31.3    
31.4    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.8    
31.9    
32.0    
32.0    
32.1    
32.2    
32.2    
32.3    
32.4    
32.4    
32.5    
32.5    
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32.7    
32.7    
32.8    
32.9    
32.9    
33.0    
33.1    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.5    
33.6    
33.7    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.1    
34.2    
34.2    
34.3    
34.4    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.2    
35.3    
35.4    
35.4    
35.5    
35.6    
35.6    
35.7    
35.8    
35.8    
35.9    
35.9    
36.0    
36.1    
36.1    
36.2    
36.3    
36.3    
36.4    
36.5    
36.5    
36.6    
36.7    
36.7    
36.8    
36.9    
36.9    
37.0    
37.1    
37.1    
37.2    
37.3    
37.3    
37.4    
37.5    
37.5    
37.6    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.0    
38.1    
38.2    
38.2    
38.3    
38.4    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.2    
39.3    
39.3    
39.4    
39.5    
39.5    
39.6    
39.7    
39.7    
39.8    
39.9    
39.9    
40.0    
40.1    
40.1    
40.2    
40.3    
40.3    
40.4    
40.5    
40.5    
40.6    
40.7    
40.7    
40.8    
40.8    
40.9    
41.0    
41.0    
41.1    
41.2    
41.2    
41.3    
41.4    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.4    
42.5    
42.5    
42.6    
42.7    
42.7    
42.8    
42.9    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.3    
43.4    
43.5    
43.5    
43.6    
43.7    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.1    
44.2    
44.2    
44.3    
44.4    
44.4    
44.5    
44.6    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.0    
45.1    
45.2    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.6    
45.7    
45.8    
45.8    
45.9    
45.9    
46.0    
46.1    
46.1    
46.2    
46.3    
46.3    
46.4    
46.5    
46.5    
46.6    
46.7    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.1    
47.2    
47.3    
47.3    
47.4    
47.5    
47.5    
47.6    
47.6    
47.7    
47.8    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.2    
49.3    
49.3    
49.4    
49.5    
49.5    
49.6    
49.7    
49.7    
49.8    
49.9    
49.9    
50.0    
50.1    
50.1    
50.2    
50.3    
50.3    
50.4    
50.5    
50.5    
50.6    
50.7    
50.7    
50.8    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.2    
52.3    
52.4    
52.4    
52.5    
52.5    
52.6    
52.7    
52.7    
52.8    
52.9    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.5    
53.6    
53.7    
53.7    
53.8    
53.9    
53.9    
54.0    
54.1    
54.1    
54.2    
54.2    
54.3    
54.4    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.4    
55.5    
55.6    
55.6    
55.7    
55.8    
55.8    
55.9    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.3    
56.4    
56.5    
56.5    
56.6    
56.7    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.1    
57.2    
57.3    
57.3    
57.4    
57.5    
57.5    
57.6    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.0    
59.1    
59.2    
59.2    
59.3    
59.3    
59.4    
59.5    
59.5    
59.6    
59.7    
59.7    
59.8    
59.9    
59.9    
60.0    
60.1    
60.1    
60.2    
60.3    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.7    
60.8    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.8    
61.9    
62.0    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.4    
62.5    
62.5    
62.6    
62.7    
62.7    
62.8    
62.9    
62.9    
63.0    
63.1    
63.1    
63.2    
63.3    
63.3    
63.4    
63.5    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
63.9    
64.0    
64.1    
64.1    
64.2    
64.2    
64.3    
64.4    
64.4    
64.5    
64.6    
64.6    
64.7    
64.8    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.6    
65.7    
65.8    
65.8    
65.9    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.3    
66.4    
66.5    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.3    
67.4    
67.5    
67.5    
67.6    
67.6    
67.7    
67.8    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.2    
69.3    
69.3    
69.4    
69.5    
69.5    
69.6    
69.7    
69.7    
69.8    
69.9    
69.9    
70.0    
70.1    
70.1    
70.2    
70.3    
70.3    
70.4    
70.5    
70.5    
70.6    
70.7    
70.7    
70.8    
70.8    
70.9    
71.0    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.2    
72.3    
72.4    
72.4    
72.5    
72.5    
72.6    
72.7    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
73.9    
74.0    
74.1    
74.1    
74.2    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.6    
75.7    
75.8    
75.8    
75.9    
75.9    
76.0    
76.1    
76.1    
76.2    
76.3    
76.3    
76.4    
76.5    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.3    
77.4    
77.5    
77.5    
77.6    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.0    
78.1    
78.2    
78.2    
78.3    
78.4    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.8    
78.9    
79.0    
79.0    
79.1    
79.2    
79.2    
79.3    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.7    
79.8    
79.9    
79.9    
80.0    
80.1    
80.1    
80.2    
80.3    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.7    
80.8    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.8    
81.9    
82.0    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.4    
82.5    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.1    
84.2    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.6    
84.7    
84.8    
84.8    
84.9    
85.0    
85.0    
85.1    
85.2    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.6    
85.7    
85.8    
85.8    
85.9    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.3    
86.4    
86.5    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.3    
87.4    
87.5    
87.5    
87.6    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.0    
88.1    
88.2    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.0    
89.1    
89.2    
89.2    
89.3    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.7    
90.8    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.4    
92.5    
92.5    
92.6    
92.7    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.1    
94.2    
94.2    
94.3    
94.4    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.4    
95.5    
95.6    
95.6    
95.7    
95.8    
95.8    
95.9    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.5    
97.6    
97.6    
97.7    
97.8    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.8    
98.9    
99.0    
99.0    
99.1    
99.2    
99.2    
99.3    
99.3    
99.4    
99.5    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
99.9    
-found 88 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 85465, rend_intergenic: 85462  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 229434, rend_intergenic: 229431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13416, rend_intergenic: 8537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17309, rend_intergenic: 14642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22222, rend_intergenic: 19950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25171, rend_intergenic: 23806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30617, rend_intergenic: 29136  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33072, rend_intergenic: 30636  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39751, rend_intergenic: 33110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53378, rend_intergenic: 41707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61605, rend_intergenic: 53734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68613, rend_intergenic: 64580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86510, rend_intergenic: 81554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88460, rend_intergenic: 86536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92292, rend_intergenic: 91053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93933, rend_intergenic: 92730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116860, rend_intergenic: 97331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121271, rend_intergenic: 116890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148198, rend_intergenic: 122579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149310, rend_intergenic: 148490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161511, rend_intergenic: 151239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168836, rend_intergenic: 166082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187185, rend_intergenic: 169622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187669, rend_intergenic: 187215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207022, rend_intergenic: 187711  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222590, rend_intergenic: 207041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237879, rend_intergenic: 224067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249242, rend_intergenic: 238237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254130, rend_intergenic: 249514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265670, rend_intergenic: 259457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 273695, rend_intergenic: 266779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 287988, rend_intergenic: 279305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 289491, rend_intergenic: 288004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10644
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support