-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_11698608-11910782

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g28202.t1
Valid prediction for Augustus_model.g28204.t1
Valid prediction for snap_scaffold_17-snap.2403-T1
Valid prediction for GeneMark_model.72632_t
Valid prediction for GeneMark_model.72628_t
Valid prediction for snap_scaffold_17-snap.2419-T1
Valid prediction for snap_scaffold_17-snap.2399-T1
Valid prediction for GlimmerHMM_glimmerT_42078-T1
Valid prediction for GlimmerHMM_glimmerT_42091-T1
Valid prediction for snap_scaffold_17-snap.2383-T1
Valid prediction for snap_scaffold_17-snap.2421-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.72630_t
Valid prediction for GeneMark_model.72624_t
Valid prediction for GeneMark_model.72615_t
Valid prediction for GeneMark_model.72636_t
Valid prediction for GlimmerHMM_glimmerT_42080-T1
Valid prediction for GeneMark_model.72611_t
Valid prediction for snap_scaffold_17-snap.2387-T1
Valid prediction for snap_scaffold_17-snap.2395-T1
Valid prediction for GeneMark_model.72642_t
Valid prediction for snap_scaffold_17-snap.2402-T1
Valid prediction for snap_scaffold_17-snap.2418-T1
Valid prediction for GlimmerHMM_glimmerT_42100-T1
Valid prediction for GlimmerHMM_glimmerT_42084-T1
Valid prediction for GlimmerHMM_glimmerT_42088-T1
Valid prediction for snap_scaffold_17-snap.2381-T1
Valid prediction for GeneMark_model.72634_t
Valid prediction for snap_scaffold_17-snap.2407-T1
Valid prediction for snap_scaffold_17-snap.2406-T1
Valid prediction for GlimmerHMM_glimmerT_42099-T1
Valid prediction for GeneMark_model.72639_t
Valid prediction for GeneMark_model.72606_t
Valid prediction for GeneMark_model.72601_t
Valid prediction for snap_scaffold_17-snap.2417-T1
Valid prediction for GeneMark_model.72621_t
Valid prediction for snap_scaffold_17-snap.2411-T1
Valid prediction for GeneMark_model.72610_t
Valid prediction for GeneMark_model.72638_t
Valid prediction for GlimmerHMM_glimmerT_42072-T1
Valid prediction for GlimmerHMM_glimmerT_42082-T1
Valid prediction for GeneMark_model.72637_t
Valid prediction for GeneMark_model.72631_t
Valid prediction for GlimmerHMM_glimmerT_42076-T1
Valid prediction for GeneMark_model.72595_t
Valid prediction for GlimmerHMM_glimmerT_42089-T1
Valid prediction for GeneMark_model.72619_t
Valid prediction for GeneMark_model.72612_t
Valid prediction for GeneMark_model.72602_t
Valid prediction for GeneMark_model.72640_t
Valid prediction for GlimmerHMM_glimmerT_42096-T1
Valid prediction for GlimmerHMM_glimmerT_42079-T1
Valid prediction for snap_scaffold_17-snap.2410-T1
Valid prediction for GlimmerHMM_glimmerT_42098-T1
Valid prediction for snap_scaffold_17-snap.2394-T1
Valid prediction for snap_scaffold_17-snap.2409-T1
Valid prediction for snap_scaffold_17-snap.2392-T1
Valid prediction for Augustus_model.g28208.t1
Valid prediction for GlimmerHMM_glimmerT_42093-T1
Valid prediction for GlimmerHMM_glimmerT_42083-T1
Valid prediction for GeneMark_model.72597_t
Valid prediction for GeneMark_model.72603_t
Valid prediction for snap_scaffold_17-snap.2401-T1
Valid prediction for snap_scaffold_17-snap.2398-T1
Valid prediction for snap_scaffold_17-snap.2396-T1
Valid prediction for snap_scaffold_17-snap.2388-T1
Valid prediction for GlimmerHMM_glimmerT_42086-T1
Valid prediction for snap_scaffold_17-snap.2390-T1
Valid prediction for snap_scaffold_17-snap.2384-T1
Valid prediction for snap_scaffold_17-snap.2412-T1
Valid prediction for snap_scaffold_17-snap.2416-T1
Valid prediction for GeneMark_model.72596_t
Valid prediction for Augustus_model.g28207.t1
Valid prediction for snap_scaffold_17-snap.2414-T1
Valid prediction for GeneMark_model.72622_t
Valid prediction for GeneMark_model.72626_t
Valid prediction for GlimmerHMM_glimmerT_42097-T1
Valid prediction for GlimmerHMM_glimmerT_42094-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_17-snap.2385-T1
Valid prediction for snap_scaffold_17-snap.2413-T1
Valid prediction for snap_scaffold_17-snap.2408-T1
Valid prediction for snap_scaffold_17-snap.2400-T1
Valid prediction for Augustus_model.g28203.t1
Valid prediction for Augustus_model.g28206.t1
Valid prediction for GeneMark_model.72607_t
Valid prediction for GlimmerHMM_glimmerT_42087-T1
Valid prediction for GeneMark_model.72609_t
Valid prediction for GeneMark_model.72600_t
Valid prediction for GeneMark_model.72618_t
Valid prediction for GeneMark_model.72635_t
Valid prediction for GlimmerHMM_glimmerT_42073-T1
Valid prediction for snap_scaffold_17-snap.2393-T1
Valid prediction for GeneMark_model.72599_t
Valid prediction for GlimmerHMM_glimmerT_42081-T1
Valid prediction for GeneMark_model.72608_t
Valid prediction for GlimmerHMM_glimmerT_42090-T1
Valid prediction for snap_scaffold_17-snap.2391-T1
Valid prediction for snap_scaffold_17-snap.2415-T1
Valid prediction for GeneMark_model.72604_t
Valid prediction for GeneMark_model.72633_t
Valid prediction for GlimmerHMM_glimmerT_42092-T1
Valid prediction for snap_scaffold_17-snap.2382-T1
Valid prediction for snap_scaffold_17-snap.2386-T1
Valid prediction for GlimmerHMM_glimmerT_42074-T1
Valid prediction for GeneMark_model.72641_t
Valid prediction for GlimmerHMM_glimmerT_42077-T1
Valid prediction for snap_scaffold_17-snap.2397-T1
Valid prediction for snap_scaffold_17-snap.2405-T1
Valid prediction for GlimmerHMM_glimmerT_42085-T1
Valid prediction for GeneMark_model.72617_t
Valid prediction for GlimmerHMM_glimmerT_42095-T1
Valid prediction for snap_scaffold_17-snap.2389-T1
Valid prediction for GeneMark_model.72620_t
Valid prediction for Augustus_model.g28205.t1
Valid prediction for GeneMark_model.72613_t
Valid prediction for snap_scaffold_17-snap.2404-T1
Valid prediction for GlimmerHMM_glimmerT_42075-T1
Valid prediction for snap_scaffold_17-snap.2420-T1
Valid prediction for GeneMark_model.72627_t
Valid prediction for GeneMark_model.72625_t
Valid prediction for GeneMark_model.72623_t
Valid prediction for GeneMark_model.72616_t
Valid prediction for GeneMark_model.72598_t
Valid prediction for GeneMark_model.72605_t
Valid prediction for snap_scaffold_17-snap.2380-T1
Valid prediction for GeneMark_model.72629_t
Valid prediction for GeneMark_model.72614_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7283, rend_intergenic: 3995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9135, rend_intergenic: 7430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13374, rend_intergenic: 9392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21062, rend_intergenic: 16611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26269, rend_intergenic: 24808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27579, rend_intergenic: 26548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33864, rend_intergenic: 30940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44949, rend_intergenic: 38600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63522, rend_intergenic: 61386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90484, rend_intergenic: 83100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102105, rend_intergenic: 100032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127470, rend_intergenic: 122755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145458, rend_intergenic: 139430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171894, rend_intergenic: 170803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172259, rend_intergenic: 171988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174829, rend_intergenic: 172674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191823, rend_intergenic: 189246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199530, rend_intergenic: 193382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 32473, rend_intergenic: 32470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 212175
-exon list size: 590


building trellis

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-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 7283, rend_intergenic: 3995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9135, rend_intergenic: 7430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13374, rend_intergenic: 9392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21062, rend_intergenic: 16611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26269, rend_intergenic: 24808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27579, rend_intergenic: 26548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33864, rend_intergenic: 30940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44949, rend_intergenic: 38600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63522, rend_intergenic: 61386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90484, rend_intergenic: 83100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102105, rend_intergenic: 100032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127470, rend_intergenic: 122755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145458, rend_intergenic: 139430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171894, rend_intergenic: 170803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172259, rend_intergenic: 171988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174829, rend_intergenic: 172674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191823, rend_intergenic: 189246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199530, rend_intergenic: 193382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 32473, rend_intergenic: 32470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11696
-exon list size: 28


building trellis

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60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 195653 - 212175
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 196077 - 212175
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 196077 - 211275
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 196077 - 207695
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 196077 - 206397
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support