-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_11259100-11523861

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 239467, 239595
Sorry, prediction pasa_asmbl_18349.p1 fails validation.
(CAG)	 TA	239467-239595	GT	AGG
(ACG)	 AG	239813-239940	GT	AGG
(GTA)	 AG	240112-240290	GT	TGG
(GCC)	 AG	240481-240668	CT	AAC
-recovered pasa_asmbl_18349.p1, terminal, 240481, 240668
-recovered pasa_asmbl_18349.p1, internal, 239813, 239940
-recovered pasa_asmbl_18349.p1, internal, 240112, 240290
Valid prediction for CodingQuarry_transcript_22126-T1
Couldn't classify 237793, 237895
Sorry, prediction pasa_asmbl_18347.p1 fails validation.
(ATG)	 AA	233733-233736	GT	GGG
(AAC)	 AG	235614-235747	GT	AGG
(CTC)	 AG	236322-236414	GT	CGG
(GAA)	 AG	236614-236713	GT	AGG
(AGC)	 AG	236826-236920	GT	AGG
(TTC)	 AG	237114-237245	GT	AGG
(GCT)	 AG	237622-237710	GT	ACG
(CCT)	 AG	237793-237895	CA	TAC
-recovered pasa_asmbl_18347.p1, initial, 233733, 233736
-recovered pasa_asmbl_18347.p1, internal, 235614, 235747
-recovered pasa_asmbl_18347.p1, internal, 236322, 236414
-recovered pasa_asmbl_18347.p1, internal, 236614, 236713
-recovered pasa_asmbl_18347.p1, internal, 236826, 236920
-recovered pasa_asmbl_18347.p1, internal, 237114, 237245
-recovered pasa_asmbl_18347.p1, internal, 237622, 237710
Valid prediction for snap_scaffold_17-snap.2310-T1
Valid prediction for GlimmerHMM_glimmerT_42023-T1
Valid prediction for snap_scaffold_17-snap.2330-T1
Valid prediction for GeneMark_model.72512_t
Valid prediction for GlimmerHMM_glimmerT_42045-T1
Valid prediction for HiQ_model.g28170.t1
Valid prediction for snap_scaffold_17-snap.2288-T1
Valid prediction for GlimmerHMM_glimmerT_42041-T1
Valid prediction for HiQ_model.g28181.t1
Valid prediction for GlimmerHMM_glimmerT_42031-T1
Valid prediction for GeneMark_model.72525_t
Valid prediction for GeneMark_model.72484_t
Valid prediction for snap_scaffold_17-snap.2321-T1
Valid prediction for snap_scaffold_17-snap.2290-T1
Valid prediction for GeneMark_model.72476_t
Valid prediction for GeneMark_model.72486_t
Valid prediction for snap_scaffold_17-snap.2323-T1
Valid prediction for GeneMark_model.72501_t
Valid prediction for GeneMark_model.72544_t
Valid prediction for snap_scaffold_17-snap.2324-T1
Valid prediction for GeneMark_model.72480_t
Valid prediction for snap_scaffold_17-snap.2327-T1
Valid prediction for GlimmerHMM_glimmerT_42011-T1
Valid prediction for GlimmerHMM_glimmerT_42014-T1
Valid prediction for GeneMark_model.72518_t
Couldn't classify 96353, 96466
Sorry, prediction pasa_asmbl_18576.p1 fails validation.
(GCC)	 CA	96353-96466	GT	ATG
(TCC)	 AG	96688-96755	GT	GCG
(AGA)	 AG	96966-97024	GT	CGG
(CCC)	 AG	97151-97254	AC	GAA
-recovered pasa_asmbl_18576.p1, terminal, 97151, 97254
-recovered pasa_asmbl_18576.p1, internal, 96688, 96755
-recovered pasa_asmbl_18576.p1, internal, 96966, 97024
Valid prediction for GlimmerHMM_glimmerT_42039-T1
Valid prediction for snap_scaffold_17-snap.2326-T1
Valid prediction for GlimmerHMM_glimmerT_42035-T1
Valid prediction for GeneMark_model.72520_t
Valid prediction for GlimmerHMM_glimmerT_42040-T1
Valid prediction for GeneMark_model.72521_t
Valid prediction for GeneMark_model.72542_t
Valid prediction for snap_scaffold_17-snap.2337-T1
Valid prediction for snap_scaffold_17-snap.2314-T1
Valid prediction for GeneMark_model.72510_t
Valid prediction for GeneMark_model.72495_t
Couldn't classify 96235, 96271
Sorry, prediction pasa_asmbl_18344.p1 fails validation.
(ATG)	 AT	89446-89539	GT	AGG
(AAA)	 AG	91228-91349	GT	AGG
(TTC)	 AG	92710-92826	GT	AGG
(GAG)	 AG	93334-93480	GT	CTG
(GAC)	 AG	95561-95697	GT	AGG
(GGG)	 AG	96235-96271	GG	GCG
-recovered pasa_asmbl_18344.p1, initial, 89446, 89539
-recovered pasa_asmbl_18344.p1, internal, 91228, 91349
-recovered pasa_asmbl_18344.p1, internal, 92710, 92826
-recovered pasa_asmbl_18344.p1, internal, 93334, 93480
-recovered pasa_asmbl_18344.p1, internal, 95561, 95697
Valid prediction for GeneMark_model.72547_t
Valid prediction for GeneMark_model.72528_t
Valid prediction for GeneMark_model.72537_t
Valid prediction for GlimmerHMM_glimmerT_42042-T1
Valid prediction for Augustus_model.g28178.t1
Valid prediction for GeneMark_model.72491_t
Valid prediction for CodingQuarry_transcript_22127-T1
Valid prediction for HiQ_model.g28182.t1
Valid prediction for snap_scaffold_17-snap.2318-T1
Valid prediction for snap_scaffold_17-snap.2335-T1
Valid prediction for CodingQuarry_transcript_22131-T1
Couldn't classify 72857, 73005
Sorry, prediction pasa_asmbl_18342.p1 fails validation.
(CCA)	 CC	72857-73005	GT	AGG
(TTT)	 AG	74563-74645	GT	TGG
(GAT)	 AG	75648-75743	GT	AGG
(AGG)	 AG	75885-76003	GT	AGG
(GAT)	 AG	76118-76258	TC	GAT
add_exon() Sorry, pasa_asmbl_18342.p1 75648-75743-terminal-1 is invalid.
-recovered pasa_asmbl_18342.p1, terminal, 75648, 75743
-recovered pasa_asmbl_18342.p1, terminal, 76118, 76258
-recovered pasa_asmbl_18342.p1, internal, 74563, 74645
-recovered pasa_asmbl_18342.p1, internal, 75648, 75743
-recovered pasa_asmbl_18342.p1, internal, 75885, 76003
Valid prediction for snap_scaffold_17-snap.2332-T1
Couldn't classify 69817, 69893
Couldn't classify 72261, 72283
Sorry, prediction pasa_asmbl_18340.p1 fails validation.
(GTT)	 GA	69817-69893	GT	AGG
(GAG)	 AG	70419-70504	GT	AGG
(GCA)	 AG	70906-71016	GT	TGG
(GGC)	 AG	72261-72283	CA	AGC
-recovered pasa_asmbl_18340.p1, internal, 70419, 70504
-recovered pasa_asmbl_18340.p1, internal, 70906, 71016
Valid prediction for GlimmerHMM_glimmerT_42033-T1
Valid prediction for pasa_asmbl_18354.p1
Valid prediction for CodingQuarry_transcript_22133-T1
Valid prediction for GlimmerHMM_glimmerT_42021-T1
Valid prediction for GeneMark_model.72530_t
Valid prediction for CodingQuarry_transcript_22128-T1
Valid prediction for GeneMark_model.72517_t
Valid prediction for GeneMark_model.72482_t
Valid prediction for GeneMark_model.72475_t
Valid prediction for GeneMark_model.72545_t
Valid prediction for GeneMark_model.72503_t
Valid prediction for GeneMark_model.72505_t
Valid prediction for Augustus_model.g28171.t1
Couldn't classify 246870, 246983
Sorry, prediction pasa_asmbl_18351.p1 fails validation.
(TTA)	 AG	246870-246983	GT	AGG
(GAA)	 AG	247086-247168	GT	AGG
(GCT)	 AG	247284-247454	GT	AGG
(GCC)	 AG	247607-247790	GT	AGG
(GTG)	 AG	247919-248108	GT	CGG
(GTG)	 AG	248358-248570	GT	AGG
(GGG)	 AG	248909-249075	GT	CGG
(ACG)	 AG	249231-249312	GT	GGG
(GAG)	 AG	249535-249680	GT	AGG
(GGT)	 AG	250073-250150	CT	AAC
-recovered pasa_asmbl_18351.p1, terminal, 250073, 250150
-recovered pasa_asmbl_18351.p1, internal, 246870, 246983
-recovered pasa_asmbl_18351.p1, internal, 247086, 247168
-recovered pasa_asmbl_18351.p1, internal, 247284, 247454
-recovered pasa_asmbl_18351.p1, internal, 247607, 247790
-recovered pasa_asmbl_18351.p1, internal, 247919, 248108
-recovered pasa_asmbl_18351.p1, internal, 248358, 248570
-recovered pasa_asmbl_18351.p1, internal, 248909, 249075
-recovered pasa_asmbl_18351.p1, internal, 249231, 249312
-recovered pasa_asmbl_18351.p1, internal, 249535, 249680
Valid prediction for snap_scaffold_17-snap.2308-T1
Valid prediction for GlimmerHMM_glimmerT_42036-T1
Valid prediction for GeneMark_model.72498_t
Valid prediction for snap_scaffold_17-snap.2315-T1
Valid prediction for GlimmerHMM_glimmerT_42017-T1
Valid prediction for snap_scaffold_17-snap.2341-T1
Valid prediction for snap_scaffold_17-snap.2295-T1
Valid prediction for snap_scaffold_17-snap.2333-T1
Valid prediction for snap_scaffold_17-snap.2303-T1
Valid prediction for GlimmerHMM_glimmerT_42043-T1
Valid prediction for HiQ_model.g28165.t1
Valid prediction for snap_scaffold_17-snap.2292-T1
Valid prediction for HiQ_model.g28168.t1
Valid prediction for GeneMark_model.72509_t
Valid prediction for GeneMark_model.72514_t
Valid prediction for GeneMark_model.72478_t
Valid prediction for CodingQuarry_transcript_22132-T1
Valid prediction for snap_scaffold_17-snap.2306-T1
Valid prediction for snap_scaffold_17-snap.2340-T1
Valid prediction for Augustus_model.g28180.t1
Valid prediction for GeneMark_model.72524_t
Valid prediction for GeneMark_model.72551_t
Valid prediction for snap_scaffold_17-snap.2329-T1
Valid prediction for Augustus_model.g28177.t1
Valid prediction for GeneMark_model.72538_t
Valid prediction for GeneMark_model.72500_t
Valid prediction for GlimmerHMM_glimmerT_42046-T1
Valid prediction for GlimmerHMM_glimmerT_42026-T1
Valid prediction for GeneMark_model.72522_t
Valid prediction for GeneMark_model.72540_t
Valid prediction for snap_scaffold_17-snap.2339-T1
Valid prediction for GlimmerHMM_glimmerT_42028-T1
Valid prediction for GeneMark_model.72553_t
Valid prediction for snap_scaffold_17-snap.2320-T1
Valid prediction for GeneMark_model.72533_t
Valid prediction for snap_scaffold_17-snap.2299-T1
Valid prediction for GeneMark_model.72493_t
Valid prediction for GeneMark_model.72550_t
Valid prediction for GlimmerHMM_glimmerT_42044-T1
Valid prediction for GlimmerHMM_glimmerT_42018-T1
Valid prediction for snap_scaffold_17-snap.2298-T1
Valid prediction for GeneMark_model.72515_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.72508_t
Valid prediction for GeneMark_model.72483_t
Valid prediction for snap_scaffold_17-snap.2300-T1
Valid prediction for snap_scaffold_17-snap.2331-T1
Valid prediction for GeneMark_model.72481_t
Valid prediction for Augustus_model.g28172.t1
Valid prediction for snap_scaffold_17-snap.2304-T1
Valid prediction for GeneMark_model.72497_t
Valid prediction for snap_scaffold_17-snap.2316-T1
Valid prediction for snap_scaffold_17-snap.2293-T1
Valid prediction for Augustus_model.g28175.t1
Valid prediction for snap_scaffold_17-snap.2334-T1
Valid prediction for GeneMark_model.72513_t
Valid prediction for GeneMark_model.72516_t
Valid prediction for GeneMark_model.72548_t
Valid prediction for GeneMark_model.72507_t
Valid prediction for GeneMark_model.72511_t
Valid prediction for GlimmerHMM_glimmerT_42037-T1
Valid prediction for GlimmerHMM_glimmerT_42032-T1
Valid prediction for GlimmerHMM_glimmerT_42012-T1
Valid prediction for snap_scaffold_17-snap.2311-T1
Valid prediction for GeneMark_model.72535_t
Valid prediction for GeneMark_model.72490_t
Valid prediction for GeneMark_model.72526_t
Valid prediction for HiQ_model.g28169.t1
Valid prediction for GeneMark_model.72499_t
Valid prediction for snap_scaffold_17-snap.2312-T1
Valid prediction for GlimmerHMM_glimmerT_42034-T1
Valid prediction for GlimmerHMM_glimmerT_42038-T1
Valid prediction for snap_scaffold_17-snap.2287-T1
Valid prediction for GlimmerHMM_glimmerT_42029-T1
Valid prediction for snap_scaffold_17-snap.2301-T1
Valid prediction for Augustus_model.g28176.t1
Valid prediction for GeneMark_model.72541_t
Valid prediction for GeneMark_model.72539_t
Valid prediction for snap_scaffold_17-snap.2336-T1
Valid prediction for GeneMark_model.72489_t
Valid prediction for Augustus_model.g28167.t1
Valid prediction for GlimmerHMM_glimmerT_42027-T1
Valid prediction for GeneMark_model.72502_t
Valid prediction for GeneMark_model.72492_t
Valid prediction for CodingQuarry_transcript_22130-T1
Valid prediction for GlimmerHMM_glimmerT_42030-T1
Valid prediction for GlimmerHMM_glimmerT_42016-T1
Valid prediction for GeneMark_model.72477_t
Valid prediction for GeneMark_model.72543_t
Valid prediction for snap_scaffold_17-snap.2294-T1
Valid prediction for GlimmerHMM_glimmerT_42022-T1
Valid prediction for GeneMark_model.72546_t
Valid prediction for Augustus_model.g28174.t1
Valid prediction for GeneMark_model.72485_t
Valid prediction for snap_scaffold_17-snap.2325-T1
Valid prediction for GeneMark_model.72536_t
Valid prediction for GlimmerHMM_glimmerT_42024-T1
Valid prediction for snap_scaffold_17-snap.2322-T1
Valid prediction for snap_scaffold_17-snap.2307-T1
Valid prediction for GeneMark_model.72479_t
Valid prediction for GlimmerHMM_glimmerT_42020-T1
Valid prediction for snap_scaffold_17-snap.2291-T1
Valid prediction for snap_scaffold_17-snap.2302-T1
Valid prediction for GeneMark_model.72532_t
Valid prediction for CodingQuarry_transcript_22129-T1
Valid prediction for GlimmerHMM_glimmerT_42013-T1
Valid prediction for GeneMark_model.72506_t
Valid prediction for GeneMark_model.72519_t
Valid prediction for GeneMark_model.72534_t
Valid prediction for snap_scaffold_17-snap.2317-T1
Valid prediction for Augustus_model.g28173.t1
Valid prediction for Augustus_model.g28166.t1
Valid prediction for GeneMark_model.72529_t
Valid prediction for GeneMark_model.72487_t
Valid prediction for GeneMark_model.72527_t
Valid prediction for GeneMark_model.72494_t
Valid prediction for snap_scaffold_17-snap.2289-T1
Valid prediction for GeneMark_model.72488_t
Valid prediction for snap_scaffold_17-snap.2328-T1
Valid prediction for snap_scaffold_17-snap.2305-T1
Valid prediction for Augustus_model.g28164.t1
Valid prediction for GeneMark_model.72554_t
Valid prediction for GeneMark_model.72523_t
Valid prediction for snap_scaffold_17-snap.2297-T1
Valid prediction for GlimmerHMM_glimmerT_42015-T1
Valid prediction for Augustus_model.g28179.t1
Valid prediction for GeneMark_model.72549_t
Valid prediction for GlimmerHMM_glimmerT_42025-T1
Valid prediction for snap_scaffold_17-snap.2338-T1
Valid prediction for GeneMark_model.72552_t
Valid prediction for snap_scaffold_17-snap.2319-T1
Valid prediction for snap_scaffold_17-snap.2296-T1
Valid prediction for GlimmerHMM_glimmerT_42019-T1
Valid prediction for pasa_asmbl_19323.p1
Valid prediction for snap_scaffold_17-snap.2309-T1
Valid prediction for snap_scaffold_17-snap.2313-T1
Valid prediction for Augustus_model.g28163.t1
Valid prediction for GeneMark_model.72504_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19395, rend_intergenic: 6830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21781, rend_intergenic: 19557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26005, rend_intergenic: 22436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30727, rend_intergenic: 26630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41765, rend_intergenic: 35796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53082, rend_intergenic: 44330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56179, rend_intergenic: 54518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76258, rend_intergenic: 72199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94018, rend_intergenic: 92575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123015, rend_intergenic: 106670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124669, rend_intergenic: 123361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143016, rend_intergenic: 129177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149478, rend_intergenic: 143907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158404, rend_intergenic: 150739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159044, rend_intergenic: 158615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165300, rend_intergenic: 159232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174958, rend_intergenic: 166313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201931, rend_intergenic: 184599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211486, rend_intergenic: 207622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219784, rend_intergenic: 218048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220436, rend_intergenic: 220102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226384, rend_intergenic: 220807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237714, rend_intergenic: 235046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238364, rend_intergenic: 237740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 264762
-exon list size: 983


building trellis

0.1    
0.2    
0.3    
0.4    
0.5    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.4    
3.5    
3.6    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.7    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.7    
5.8    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
9.9    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 59 predictions from path traversal
Error with prediction: snap lend_intergenic: 19395, rend_intergenic: 6830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21781, rend_intergenic: 19557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26005, rend_intergenic: 22436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30727, rend_intergenic: 26630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41765, rend_intergenic: 35796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53082, rend_intergenic: 44330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56179, rend_intergenic: 54518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76258, rend_intergenic: 72199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94018, rend_intergenic: 92575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123015, rend_intergenic: 106670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124669, rend_intergenic: 123361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143016, rend_intergenic: 129177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149478, rend_intergenic: 143907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158404, rend_intergenic: 150739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159044, rend_intergenic: 158615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165300, rend_intergenic: 159232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174958, rend_intergenic: 166313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201931, rend_intergenic: 184599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211486, rend_intergenic: 207622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 219784, rend_intergenic: 218048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220436, rend_intergenic: 220102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226384, rend_intergenic: 220807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237714, rend_intergenic: 235046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 238364, rend_intergenic: 237740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support