-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_10864857-11084387

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_17-snap.2226-T1
Valid prediction for GeneMark_model.72379_t
Valid prediction for GeneMark_model.72386_t
Valid prediction for GeneMark_model.72397_t
Valid prediction for GlimmerHMM_glimmerT_41974-T1
Valid prediction for GeneMark_model.72351_t
Valid prediction for GeneMark_model.72389_t
Valid prediction for snap_scaffold_17-snap.2210-T1
Valid prediction for snap_scaffold_17-snap.2207-T1
Valid prediction for GlimmerHMM_glimmerT_41988-T1
Valid prediction for snap_scaffold_17-snap.2211-T1
Valid prediction for GeneMark_model.72354_t
Valid prediction for snap_scaffold_17-snap.2244-T1
Valid prediction for GeneMark_model.72342_t
Valid prediction for GlimmerHMM_glimmerT_41968-T1
Valid prediction for snap_scaffold_17-snap.2202-T1
Valid prediction for snap_scaffold_17-snap.2215-T1
Valid prediction for snap_scaffold_17-snap.2231-T1
Valid prediction for GlimmerHMM_glimmerT_41965-T1
Valid prediction for snap_scaffold_17-snap.2240-T1
Valid prediction for GlimmerHMM_glimmerT_41977-T1
Valid prediction for GeneMark_model.72402_t
Valid prediction for GlimmerHMM_glimmerT_41971-T1
Valid prediction for GeneMark_model.72381_t
Valid prediction for snap_scaffold_17-snap.2204-T1
Valid prediction for GeneMark_model.72418_t
Valid prediction for GeneMark_model.72383_t
Valid prediction for GeneMark_model.72346_t
Valid prediction for snap_scaffold_17-snap.2203-T1
Valid prediction for GlimmerHMM_glimmerT_41959-T1
Valid prediction for GlimmerHMM_glimmerT_41954-T1
Valid prediction for Augustus_model.g28136.t1
Valid prediction for GlimmerHMM_glimmerT_41966-T1
Valid prediction for GeneMark_model.72366_t
Valid prediction for GeneMark_model.72365_t
Valid prediction for snap_scaffold_17-snap.2235-T1
Valid prediction for snap_scaffold_17-snap.2245-T1
Valid prediction for GlimmerHMM_glimmerT_41973-T1
Valid prediction for snap_scaffold_17-snap.2218-T1
Valid prediction for snap_scaffold_17-snap.2220-T1
Valid prediction for GeneMark_model.72349_t
Valid prediction for GeneMark_model.72374_t
Valid prediction for GlimmerHMM_glimmerT_41967-T1
Valid prediction for Augustus_model.g28146.t1
Valid prediction for snap_scaffold_17-snap.2230-T1
Valid prediction for snap_scaffold_17-snap.2247-T1
Valid prediction for GlimmerHMM_glimmerT_41975-T1
Valid prediction for snap_scaffold_17-snap.2238-T1
Valid prediction for Augustus_model.g28134.t1
Valid prediction for Augustus_model.g28147.t1
Valid prediction for snap_scaffold_17-snap.2237-T1
Valid prediction for GlimmerHMM_glimmerT_41955-T1
Valid prediction for GeneMark_model.72363_t
Valid prediction for GlimmerHMM_glimmerT_41964-T1
Valid prediction for GeneMark_model.72406_t
Valid prediction for snap_scaffold_17-snap.2201-T1
Valid prediction for GeneMark_model.72388_t
Valid prediction for GeneMark_model.72411_t
Valid prediction for GlimmerHMM_glimmerT_41984-T1
Valid prediction for GeneMark_model.72347_t
Valid prediction for GeneMark_model.72393_t
Valid prediction for GeneMark_model.72413_t
Valid prediction for snap_scaffold_17-snap.2224-T1
Valid prediction for GeneMark_model.72399_t
Valid prediction for Augustus_model.g28140.t1
Valid prediction for GeneMark_model.72392_t
Valid prediction for GlimmerHMM_glimmerT_41980-T1
Valid prediction for snap_scaffold_17-snap.2223-T1
Valid prediction for snap_scaffold_17-snap.2205-T1
Valid prediction for GeneMark_model.72391_t
Valid prediction for snap_scaffold_17-snap.2233-T1
Valid prediction for GlimmerHMM_glimmerT_41962-T1
Valid prediction for GlimmerHMM_glimmerT_41963-T1
Valid prediction for GeneMark_model.72343_t
Couldn't classify 165482, 165614
Sorry, prediction pasa_asmbl_18321.p1 fails validation.
(GAT)	 AG	165482-165614	GT	AGG
(AAT)	 AG	165715-165888	GT	TGG
(ACC)	 AG	166144-166259	GT	ACG
(ACC)	 AG	166505-166665	GT	ATG
(CTG)	 AG	166776-166902	GT	AGG
(ACT)	 AG	167036-167113	GT	AGG
(GTC)	 AG	167294-167370	GT	AGG
(TAA)	 AG	167521-167578	GT	TGG
(TTC)	 AG	167667-167777	GT	TGG
(GCT)	 AG	167899-167961	AG	AGA
-recovered pasa_asmbl_18321.p1, terminal, 167899, 167961
-recovered pasa_asmbl_18321.p1, internal, 165482, 165614
-recovered pasa_asmbl_18321.p1, internal, 165715, 165888
-recovered pasa_asmbl_18321.p1, internal, 166144, 166259
-recovered pasa_asmbl_18321.p1, internal, 166505, 166665
-recovered pasa_asmbl_18321.p1, internal, 166776, 166902
-recovered pasa_asmbl_18321.p1, internal, 167036, 167113
-recovered pasa_asmbl_18321.p1, internal, 167294, 167370
-recovered pasa_asmbl_18321.p1, internal, 167521, 167578
-recovered pasa_asmbl_18321.p1, internal, 167667, 167777
Valid prediction for GlimmerHMM_glimmerT_41956-T1
Valid prediction for GeneMark_model.72405_t
Valid prediction for HiQ_model.g28144.t1
Valid prediction for GeneMark_model.72409_t
Valid prediction for GeneMark_model.72341_t
Valid prediction for GlimmerHMM_glimmerT_41986-T1
Valid prediction for GeneMark_model.72376_t
Couldn't classify 210612, 210768
Sorry, prediction pasa_asmbl_18326.p1 fails validation.
(GGT)	 CA	210612-210768	GT	AGG
(AGC)	 AG	211361-211404	GT	CCG
(TCC)	 AG	211493-211643	GT	AGG
(GCT)	 AG	212385-212492	GT	AGG
(CTT)	 AG	212590-212747	GT	AGG
(GCG)	 AG	212851-213039	GT	ATG
(GGT)	 AG	213258-216978	GT	GTG
(GTA)	 AG	217465-217490	TC	GAT
add_exon() Sorry, pasa_asmbl_18326.p1 212385-212492-terminal-1 is invalid.
-recovered pasa_asmbl_18326.p1, terminal, 212385, 212492
-recovered pasa_asmbl_18326.p1, terminal, 217465, 217490
-recovered pasa_asmbl_18326.p1, internal, 211361, 211404
-recovered pasa_asmbl_18326.p1, internal, 211493, 211643
-recovered pasa_asmbl_18326.p1, internal, 212385, 212492
-recovered pasa_asmbl_18326.p1, internal, 212590, 212747
-recovered pasa_asmbl_18326.p1, internal, 212851, 213039
-recovered pasa_asmbl_18326.p1, internal, 213258, 216978
Valid prediction for GlimmerHMM_glimmerT_41985-T1
Valid prediction for GeneMark_model.72396_t
Valid prediction for snap_scaffold_17-snap.2213-T1
Valid prediction for GeneMark_model.72372_t
Valid prediction for snap_scaffold_17-snap.2221-T1
Valid prediction for GeneMark_model.72353_t
Valid prediction for GeneMark_model.72385_t
Valid prediction for GeneMark_model.72361_t
Valid prediction for GeneMark_model.72416_t
Valid prediction for GeneMark_model.72370_t
Valid prediction for snap_scaffold_17-snap.2234-T1
Valid prediction for GeneMark_model.72356_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.72352_t
Valid prediction for GlimmerHMM_glimmerT_41970-T1
Valid prediction for GlimmerHMM_glimmerT_41972-T1
Valid prediction for GlimmerHMM_glimmerT_41961-T1
Valid prediction for GeneMark_model.72414_t
Valid prediction for GeneMark_model.72380_t
Valid prediction for GlimmerHMM_glimmerT_41953-T1
Valid prediction for GeneMark_model.72360_t
Valid prediction for GeneMark_model.72384_t
Valid prediction for Augustus_model.g28143.t1
Valid prediction for GlimmerHMM_glimmerT_41987-T1
Valid prediction for GeneMark_model.72394_t
Valid prediction for GeneMark_model.72401_t
Valid prediction for snap_scaffold_17-snap.2217-T1
Valid prediction for GeneMark_model.72378_t
Valid prediction for GeneMark_model.72357_t
Valid prediction for GlimmerHMM_glimmerT_41979-T1
Valid prediction for GeneMark_model.72407_t
Valid prediction for GeneMark_model.72377_t
Valid prediction for snap_scaffold_17-snap.2241-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_17-snap.2236-T1
Valid prediction for HiQ_model.g28139.t1
Valid prediction for snap_scaffold_17-snap.2219-T1
Valid prediction for snap_scaffold_17-snap.2228-T1
Valid prediction for snap_scaffold_17-snap.2229-T1
Valid prediction for GlimmerHMM_glimmerT_41983-T1
Valid prediction for GeneMark_model.72375_t
Valid prediction for snap_scaffold_17-snap.2246-T1
Valid prediction for GeneMark_model.72404_t
Valid prediction for GeneMark_model.72390_t
Valid prediction for GeneMark_model.72358_t
Valid prediction for CodingQuarry_transcript_22121-T1
Valid prediction for GeneMark_model.72362_t
Valid prediction for GeneMark_model.72395_t
Valid prediction for GeneMark_model.72345_t
Valid prediction for GeneMark_model.72350_t
Valid prediction for Augustus_model.g28135.t1
Valid prediction for GeneMark_model.72355_t
Valid prediction for GeneMark_model.72382_t
Valid prediction for snap_scaffold_17-snap.2208-T1
Valid prediction for snap_scaffold_17-snap.2209-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_19305.p1
Valid prediction for GeneMark_model.72408_t
Valid prediction for Augustus_model.g28141.t1
Valid prediction for GeneMark_model.72398_t
Valid prediction for Augustus_model.g28145.t1
Valid prediction for GeneMark_model.72369_t
Valid prediction for snap_scaffold_17-snap.2200-T1
Valid prediction for GlimmerHMM_glimmerT_41957-T1
Valid prediction for snap_scaffold_17-snap.2212-T1
Valid prediction for snap_scaffold_17-snap.2225-T1
Valid prediction for snap_scaffold_17-snap.2216-T1
Valid prediction for CodingQuarry_transcript_22122-T1
Valid prediction for GlimmerHMM_glimmerT_41958-T1
Valid prediction for snap_scaffold_17-snap.2227-T1
Valid prediction for snap_scaffold_17-snap.2239-T1
Valid prediction for pasa_asmbl_19309.p1
Valid prediction for snap_scaffold_17-snap.2206-T1
Valid prediction for GlimmerHMM_glimmerT_41978-T1
Couldn't classify 48202, 48315
Sorry, prediction pasa_asmbl_19314.p1 fails validation.
(GAG)	 GG	48202-48315	GT	AGG
(GTC)	 AG	48862-48912	GT	AGG
(GAG)	 AG	49089-49303	GT	AGG
(ATA)	 AG	49433-49640	GT	GGG
(GAG)	 AG	49974-50098	GT	AGG
(GGA)	 AG	50381-50465	CC	AAC
add_exon() Sorry, pasa_asmbl_19314.p1 49974-50098-terminal-2 is invalid.
-recovered pasa_asmbl_19314.p1, terminal, 49974, 50098
-recovered pasa_asmbl_19314.p1, terminal, 50381, 50465
-recovered pasa_asmbl_19314.p1, internal, 48862, 48912
-recovered pasa_asmbl_19314.p1, internal, 49089, 49303
-recovered pasa_asmbl_19314.p1, internal, 49433, 49640
-recovered pasa_asmbl_19314.p1, internal, 49974, 50098
Valid prediction for GeneMark_model.72412_t
Valid prediction for GeneMark_model.72417_t
Valid prediction for GeneMark_model.72400_t
Valid prediction for CodingQuarry_transcript_22120-T1
Valid prediction for GeneMark_model.72359_t
Valid prediction for GeneMark_model.72415_t
Valid prediction for GlimmerHMM_glimmerT_41960-T1
Valid prediction for GlimmerHMM_glimmerT_41969-T1
Valid prediction for snap_scaffold_17-snap.2222-T1
Valid prediction for snap_scaffold_17-snap.2232-T1
Valid prediction for GlimmerHMM_glimmerT_41981-T1
Valid prediction for GeneMark_model.72387_t
Valid prediction for Augustus_model.g28138.t1
Valid prediction for GeneMark_model.72371_t
Valid prediction for GeneMark_model.72373_t
Valid prediction for Augustus_model.g28142.t1
Valid prediction for GlimmerHMM_glimmerT_41976-T1
Valid prediction for Augustus_model.g28132.t1
Valid prediction for GeneMark_model.72364_t
Valid prediction for GeneMark_model.72410_t
Valid prediction for GeneMark_model.72367_t
Valid prediction for GeneMark_model.72348_t
Valid prediction for snap_scaffold_17-snap.2242-T1
Valid prediction for snap_scaffold_17-snap.2214-T1
Valid prediction for Augustus_model.g28137.t1
Valid prediction for GlimmerHMM_glimmerT_41982-T1
Valid prediction for GeneMark_model.72403_t
Valid prediction for GeneMark_model.72344_t
Valid prediction for snap_scaffold_17-snap.2243-T1
Valid prediction for Augustus_model.g28133.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13396, rend_intergenic: 3446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30336, rend_intergenic: 21100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43325, rend_intergenic: 33753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47879, rend_intergenic: 44328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49264, rend_intergenic: 47964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53446, rend_intergenic: 49395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60131, rend_intergenic: 56336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63827, rend_intergenic: 60145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70663, rend_intergenic: 67739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77456, rend_intergenic: 70912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85674, rend_intergenic: 82003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98086, rend_intergenic: 89469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105788, rend_intergenic: 100442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120502, rend_intergenic: 109686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138445, rend_intergenic: 131824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141167, rend_intergenic: 139263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152598, rend_intergenic: 141418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155539, rend_intergenic: 152604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175074, rend_intergenic: 166058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185374, rend_intergenic: 175633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208263, rend_intergenic: 186308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210943, rend_intergenic: 210124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 219531
-exon list size: 1005


building trellis

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38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 57 predictions from path traversal
Error with prediction: snap lend_intergenic: 13396, rend_intergenic: 3446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30336, rend_intergenic: 21100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43325, rend_intergenic: 33753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47879, rend_intergenic: 44328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49264, rend_intergenic: 47964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53446, rend_intergenic: 49395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60131, rend_intergenic: 56336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63827, rend_intergenic: 60145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70663, rend_intergenic: 67739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77456, rend_intergenic: 70912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85674, rend_intergenic: 82003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98086, rend_intergenic: 89469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105788, rend_intergenic: 100442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120502, rend_intergenic: 109686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138445, rend_intergenic: 131824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141167, rend_intergenic: 139263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152598, rend_intergenic: 141418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155539, rend_intergenic: 152604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175074, rend_intergenic: 166058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185374, rend_intergenic: 175633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208263, rend_intergenic: 186308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210943, rend_intergenic: 210124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support