-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_17/scaffold_17_10493980-10704523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_41902-T1
Valid prediction for snap_scaffold_17-snap.2149-T1
Valid prediction for snap_scaffold_17-snap.2114-T1
Valid prediction for GeneMark_model.72226_t
Valid prediction for snap_scaffold_17-snap.2144-T1
Valid prediction for snap_scaffold_17-snap.2130-T1
Valid prediction for GeneMark_model.72265_t
Valid prediction for snap_scaffold_17-snap.2137-T1
Valid prediction for GeneMark_model.72244_t
Valid prediction for GlimmerHMM_glimmerT_41922-T1
Valid prediction for GeneMark_model.72225_t
Valid prediction for GeneMark_model.72221_t
Valid prediction for GeneMark_model.72246_t
Valid prediction for GlimmerHMM_glimmerT_41908-T1
Valid prediction for snap_scaffold_17-snap.2131-T1
Valid prediction for GeneMark_model.72254_t
Valid prediction for Augustus_model.g28108.t1
Valid prediction for snap_scaffold_17-snap.2151-T1
Valid prediction for GeneMark_model.72262_t
Valid prediction for GeneMark_model.72248_t
Valid prediction for snap_scaffold_17-snap.2132-T1
Valid prediction for GeneMark_model.72275_t
Valid prediction for GeneMark_model.72286_t
Valid prediction for Augustus_model.g28116.t1
Valid prediction for GeneMark_model.72231_t
Valid prediction for GlimmerHMM_glimmerT_41906-T1
Valid prediction for GeneMark_model.72227_t
Valid prediction for GeneMark_model.72277_t
Valid prediction for GeneMark_model.72216_t
Valid prediction for GeneMark_model.72270_t
Valid prediction for snap_scaffold_17-snap.2125-T1
Valid prediction for GlimmerHMM_glimmerT_41925-T1
Valid prediction for GlimmerHMM_glimmerT_41920-T1
Valid prediction for GeneMark_model.72242_t
Valid prediction for GeneMark_model.72288_t
Valid prediction for GeneMark_model.72209_t
Valid prediction for Augustus_model.g28109.t1
Valid prediction for GeneMark_model.72238_t
Valid prediction for GlimmerHMM_glimmerT_41919-T1
Valid prediction for snap_scaffold_17-snap.2117-T1
Valid prediction for snap_scaffold_17-snap.2121-T1
Valid prediction for snap_scaffold_17-snap.2140-T1
Valid prediction for snap_scaffold_17-snap.2154-T1
Valid prediction for snap_scaffold_17-snap.2126-T1
Valid prediction for GeneMark_model.72268_t
Valid prediction for GlimmerHMM_glimmerT_41911-T1
Valid prediction for snap_scaffold_17-snap.2146-T1
Valid prediction for snap_scaffold_17-snap.2139-T1
Valid prediction for GeneMark_model.72264_t
Valid prediction for GeneMark_model.72232_t
Valid prediction for GlimmerHMM_glimmerT_41923-T1
Valid prediction for GeneMark_model.72240_t
Valid prediction for GeneMark_model.72285_t
Valid prediction for GeneMark_model.72261_t
Valid prediction for GeneMark_model.72251_t
Valid prediction for snap_scaffold_17-snap.2138-T1
Valid prediction for GeneMark_model.72255_t
Valid prediction for snap_scaffold_17-snap.2135-T1
Valid prediction for snap_scaffold_17-snap.2122-T1
Valid prediction for snap_scaffold_17-snap.2134-T1
Valid prediction for GeneMark_model.72224_t
Valid prediction for GeneMark_model.72273_t
Valid prediction for GeneMark_model.72284_t
Valid prediction for GeneMark_model.72267_t
Valid prediction for GeneMark_model.72234_t
Valid prediction for GeneMark_model.72279_t
Valid prediction for GeneMark_model.72217_t
Valid prediction for GeneMark_model.72211_t
Valid prediction for GlimmerHMM_glimmerT_41924-T1
Valid prediction for snap_scaffold_17-snap.2148-T1
Valid prediction for snap_scaffold_17-snap.2116-T1
Valid prediction for GeneMark_model.72253_t
Valid prediction for snap_scaffold_17-snap.2118-T1
Valid prediction for GlimmerHMM_glimmerT_41903-T1
Valid prediction for snap_scaffold_17-snap.2123-T1
Valid prediction for GeneMark_model.72241_t
Valid prediction for GeneMark_model.72266_t
Valid prediction for GeneMark_model.72236_t
Valid prediction for GeneMark_model.72272_t
Valid prediction for GlimmerHMM_glimmerT_41907-T1
Valid prediction for GlimmerHMM_glimmerT_41914-T1
Valid prediction for GeneMark_model.72219_t
Valid prediction for GeneMark_model.72282_t
Valid prediction for snap_scaffold_17-snap.2142-T1
Valid prediction for snap_scaffold_17-snap.2156-T1
Valid prediction for GlimmerHMM_glimmerT_41915-T1
Valid prediction for GeneMark_model.72259_t
Valid prediction for GlimmerHMM_glimmerT_41912-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_41921-T1
Valid prediction for snap_scaffold_17-snap.2158-T1
Valid prediction for GeneMark_model.72250_t
Valid prediction for GeneMark_model.72208_t
Valid prediction for snap_scaffold_17-snap.2129-T1
Valid prediction for GeneMark_model.72210_t
Valid prediction for GeneMark_model.72290_t
Valid prediction for GeneMark_model.72287_t
Valid prediction for GeneMark_model.72274_t
Valid prediction for GeneMark_model.72291_t
Valid prediction for GlimmerHMM_glimmerT_41918-T1
Valid prediction for GeneMark_model.72223_t
Valid prediction for Augustus_model.g28112.t1
Valid prediction for snap_scaffold_17-snap.2150-T1
Valid prediction for GeneMark_model.72213_t
Valid prediction for GlimmerHMM_glimmerT_41916-T1
Valid prediction for Augustus_model.g28119.t1
Valid prediction for GeneMark_model.72218_t
Valid prediction for Augustus_model.g28120.t1
Valid prediction for snap_scaffold_17-snap.2143-T1
Valid prediction for snap_scaffold_17-snap.2115-T1
Valid prediction for GeneMark_model.72230_t
Valid prediction for GeneMark_model.72233_t
Valid prediction for GeneMark_model.72269_t
Valid prediction for snap_scaffold_17-snap.2136-T1
Valid prediction for snap_scaffold_17-snap.2127-T1
Valid prediction for GlimmerHMM_glimmerT_41913-T1
Valid prediction for snap_scaffold_17-snap.2124-T1
Valid prediction for snap_scaffold_17-snap.2119-T1
Valid prediction for GeneMark_model.72289_t
Valid prediction for GeneMark_model.72237_t
Valid prediction for Augustus_model.g28114.t1
Valid prediction for GlimmerHMM_glimmerT_41917-T1
Valid prediction for snap_scaffold_17-snap.2141-T1
Valid prediction for GeneMark_model.72280_t
Valid prediction for GeneMark_model.72258_t
Valid prediction for Augustus_model.g28122.t1
Valid prediction for snap_scaffold_17-snap.2120-T1
Valid prediction for Augustus_model.g28118.t1
Valid prediction for GeneMark_model.72271_t
Valid prediction for GeneMark_model.72260_t
Valid prediction for snap_scaffold_17-snap.2152-T1
Valid prediction for GeneMark_model.72283_t
Valid prediction for GeneMark_model.72278_t
Valid prediction for GeneMark_model.72215_t
Valid prediction for GlimmerHMM_glimmerT_41910-T1
Valid prediction for GeneMark_model.72252_t
Valid prediction for GeneMark_model.72235_t
Valid prediction for snap_scaffold_17-snap.2153-T1
Valid prediction for GeneMark_model.72256_t
Valid prediction for GlimmerHMM_glimmerT_41905-T1
Valid prediction for Augustus_model.g28121.t1
Valid prediction for GeneMark_model.72220_t
Valid prediction for GeneMark_model.72212_t
Valid prediction for GeneMark_model.72249_t
Valid prediction for snap_scaffold_17-snap.2145-T1
Valid prediction for snap_scaffold_17-snap.2155-T1
Valid prediction for snap_scaffold_17-snap.2147-T1
Valid prediction for GlimmerHMM_glimmerT_41909-T1
Valid prediction for Augustus_model.g28113.t1
Valid prediction for Augustus_model.g28111.t1
Valid prediction for GeneMark_model.72276_t
Valid prediction for GeneMark_model.72228_t
Valid prediction for snap_scaffold_17-snap.2157-T1
Valid prediction for Augustus_model.g28117.t1
Valid prediction for snap_scaffold_17-snap.2128-T1
Valid prediction for GeneMark_model.72243_t
Valid prediction for GeneMark_model.72229_t
Valid prediction for GlimmerHMM_glimmerT_41904-T1
Valid prediction for GeneMark_model.72281_t
Valid prediction for Augustus_model.g28115.t1
Valid prediction for GeneMark_model.72239_t
Valid prediction for GeneMark_model.72245_t
Valid prediction for Augustus_model.g28110.t1
Valid prediction for snap_scaffold_17-snap.2113-T1
Valid prediction for GeneMark_model.72257_t
Valid prediction for GeneMark_model.72247_t
Valid prediction for snap_scaffold_17-snap.2133-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12840, rend_intergenic: 7644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29878, rend_intergenic: 13604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35991, rend_intergenic: 29937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57261, rend_intergenic: 39183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66268, rend_intergenic: 58784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89313, rend_intergenic: 68770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99357, rend_intergenic: 95427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119233, rend_intergenic: 112907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135045, rend_intergenic: 122070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144940, rend_intergenic: 143450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149201, rend_intergenic: 145366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156190, rend_intergenic: 153472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159399, rend_intergenic: 158856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162449, rend_intergenic: 160476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175711, rend_intergenic: 165814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186032, rend_intergenic: 180254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189980, rend_intergenic: 187228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192382, rend_intergenic: 190129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201463, rend_intergenic: 199113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210544
-exon list size: 920


building trellis

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75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 12840, rend_intergenic: 7644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29878, rend_intergenic: 13604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35991, rend_intergenic: 29937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57261, rend_intergenic: 39183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66268, rend_intergenic: 58784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89313, rend_intergenic: 68770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99357, rend_intergenic: 95427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119233, rend_intergenic: 112907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135045, rend_intergenic: 122070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144940, rend_intergenic: 143450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149201, rend_intergenic: 145366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156190, rend_intergenic: 153472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159399, rend_intergenic: 158856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162449, rend_intergenic: 160476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175711, rend_intergenic: 165814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186032, rend_intergenic: 180254  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189980, rend_intergenic: 187228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192382, rend_intergenic: 190129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201463, rend_intergenic: 199113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 199058 - 210544
-exon list size: 46


building trellis

2.1    
4.2    
6.2    
8.3    
10.4    
12.5    
14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
27.1    
29.2    
31.2    
33.3    
35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
66.7    
68.8    
70.8    
72.9    
75.0    
77.1    
79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support