-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1699

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 261
Sorry, prediction GeneMark_model.109633_t fails validation.
(CGG)	 AG	133-261	GC	GGG
(AGA)	 AG	286-316	GA	GAG
-recovered GeneMark_model.109633_t, terminal, 286, 316
-recovered GeneMark_model.109633_t, internal, 133, 261
Couldn't classify 1573, 1610
Sorry, prediction GeneMark_model.109634_t fails validation.
(ATG)	 CT	1232-1254	GT	GAG
(GGG)	 AG	1284-1307	GT	AAG
(AGA)	 AG	1341-1472	GT	AAG
(GGG)	 AG	1493-1501	GT	GGG
(TGA)	 AG	1535-1549	GT	AAG
(GGT)	 AG	1573-1610	GT	GGG
-recovered GeneMark_model.109634_t, initial, 1232, 1254
-recovered GeneMark_model.109634_t, internal, 1284, 1307
-recovered GeneMark_model.109634_t, internal, 1341, 1472
-recovered GeneMark_model.109634_t, internal, 1493, 1501
-recovered GeneMark_model.109634_t, internal, 1535, 1549
-recovered GeneMark_model.109634_t, internal, 1573, 1610
Valid prediction for snap_scaffold_1699-snap.1-T1
add_exon() Sorry, snap_scaffold_1699-snap.1-T1 117-316-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62782-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 805, 865
Sorry, prediction snap_scaffold_1699-snap.2-T1 fails validation.
(CAA)	 AG	805-865	GT	TGG
(CGT)	 AG	948-1109	TT	AAT
-recovered snap_scaffold_1699-snap.2-T1, terminal, 948, 1109
-recovered snap_scaffold_1699-snap.2-T1, internal, 805, 865

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2033
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support