-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 108, 277
Sorry, prediction Augustus_model.g41789.t1 fails validation.
(GGG)	 AG	108-277	GT	AAG
(GAG)	 AG	1441-1589	AT	AAA
-recovered Augustus_model.g41789.t1, terminal, 1441, 1589
-recovered Augustus_model.g41789.t1, internal, 108, 277
Couldn't classify 108, 228
Sorry, prediction GeneMark_model.109626_t fails validation.
(GGG)	 AG	108-228	GT	AGG
(AGA)	 AG	653-673	GT	GGG
(AGC)	 AG	696-746	GT	GAG
(GAG)	 AG	781-829	TA	AAT
-recovered GeneMark_model.109626_t, terminal, 781, 829
-recovered GeneMark_model.109626_t, internal, 108, 228
-recovered GeneMark_model.109626_t, internal, 653, 673
-recovered GeneMark_model.109626_t, internal, 696, 746
Couldn't classify 108, 277
Sorry, prediction snap_scaffold_1694-snap.1-T1 fails validation.
(GGG)	 AG	108-277	GT	AAG
(CAA)	 AG	501-714	GT	GGG
(GTT)	 AG	1388-1589	AT	AAA
-recovered snap_scaffold_1694-snap.1-T1, terminal, 1388, 1589
-recovered snap_scaffold_1694-snap.1-T1, internal, 108, 277
-recovered snap_scaffold_1694-snap.1-T1, internal, 501, 714

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 17, 148
Sorry, prediction GeneMark_model.109627_t fails validation.
(CTG)	 AG	17-148	GT	AAG
(CAG)	 AG	485-649	GT	ACG
(GAG)	 AG	711-743	GT	AAG
(TAT)	 AG	766-786	GT	AGG
(TGA)	 AG	810-875	GT	GGG
(GAG)	 AG	916-945	GT	GAG
(CGA)	 AG	976-987	GT	AGG
(GGA)	 AG	1011-1019	GT	ATG
(AGA)	 AG	1054-1068	GT	GTG
(GAT)	 AG	1098-1115	GT	GAG
(GGG)	 AG	1145-1178	TT	AAT
-recovered GeneMark_model.109627_t, terminal, 766, 786
-recovered GeneMark_model.109627_t, terminal, 1145, 1178
-recovered GeneMark_model.109627_t, internal, 17, 148
-recovered GeneMark_model.109627_t, internal, 485, 649
-recovered GeneMark_model.109627_t, internal, 711, 743
-recovered GeneMark_model.109627_t, internal, 766, 786
-recovered GeneMark_model.109627_t, internal, 810, 875
-recovered GeneMark_model.109627_t, internal, 916, 945
-recovered GeneMark_model.109627_t, internal, 976, 987
-recovered GeneMark_model.109627_t, internal, 1011, 1019
-recovered GeneMark_model.109627_t, internal, 1054, 1068
-recovered GeneMark_model.109627_t, internal, 1098, 1115
Valid prediction for GlimmerHMM_glimmerT_62780-T1
Valid prediction for GlimmerHMM_glimmerT_62781-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2044
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support