-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 533, 632
Sorry, prediction GeneMark_model.109625_t fails validation.
(ACT)	 AG	533-632	GT	CTG
(ATG)	 AG	800-832	GT	CGG
(AAC)	 AG	914-1010	GT	ATG
(AAC)	 AG	1072-1088	GT	AGG
(GAT)	 AG	1111-1131	GT	CTG
(GAA)	 AG	1167-1187	GT	AGG
(GGA)	 AG	1207-1224	GT	AGG
(ATG)	 AG	1248-1251	CA	GAC
-recovered GeneMark_model.109625_t, initial, 800, 832
-recovered GeneMark_model.109625_t, terminal, 1248, 1251
-recovered GeneMark_model.109625_t, internal, 533, 632
-recovered GeneMark_model.109625_t, internal, 800, 832
-recovered GeneMark_model.109625_t, internal, 914, 1010
-recovered GeneMark_model.109625_t, internal, 1072, 1088
-recovered GeneMark_model.109625_t, internal, 1111, 1131
-recovered GeneMark_model.109625_t, internal, 1167, 1187
-recovered GeneMark_model.109625_t, internal, 1207, 1224

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62779-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62779-T1 1446-2016-terminal-1 is invalid.
Couldn't classify 1833, 1943
Sorry, prediction snap_scaffold_1693-snap.1-T1 fails validation.
(ATG)	 AA	508-544	GT	AGG
(GGC)	 AG	1406-1670	GT	AAG
(AGA)	 AG	1833-1943	GT	GGG
-recovered snap_scaffold_1693-snap.1-T1, initial, 508, 544
-recovered snap_scaffold_1693-snap.1-T1, internal, 1406, 1670
-recovered snap_scaffold_1693-snap.1-T1, internal, 1833, 1943

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2045
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support