-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1688

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 147, 155
Sorry, prediction GeneMark_model.109620_t fails validation.
(GGA)	 AG	147-155	GT	AAG
(AAG)	 AG	181-207	GT	AGG
(AGA)	 AG	239-310	GT	AGG
(AGA)	 AG	343-363	GT	GAG
(AGA)	 AG	385-390	GT	AGG
(AGA)	 AG	427-556	AA	AGA
-recovered GeneMark_model.109620_t, terminal, 147, 155
-recovered GeneMark_model.109620_t, terminal, 427, 556
-recovered GeneMark_model.109620_t, internal, 147, 155
-recovered GeneMark_model.109620_t, internal, 181, 207
-recovered GeneMark_model.109620_t, internal, 239, 310
-recovered GeneMark_model.109620_t, internal, 343, 363
-recovered GeneMark_model.109620_t, internal, 385, 390
Couldn't classify 77, 155
Sorry, prediction snap_scaffold_1688-snap.1-T1 fails validation.
(GCT)	 AG	77-155	GT	AAG
(GGC)	 AG	837-949	TG	GAT
add_exon() Sorry, snap_scaffold_1688-snap.1-T1 77-155-terminal-3 is invalid.
-recovered snap_scaffold_1688-snap.1-T1, terminal, 77, 155
-recovered snap_scaffold_1688-snap.1-T1, terminal, 837, 949
-recovered snap_scaffold_1688-snap.1-T1, internal, 77, 155

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2049
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support