-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1685

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 350, 451
Sorry, prediction GeneMark_model.109618_t fails validation.
(TGT)	 AG	350-451	GT	GGG
(TGA)	 AG	768-821	GT	GGG
(GGG)	 AG	849-854	GT	GAG
(CAA)	 AG	881-928	GT	GGG
(GGG)	 AG	950-961	GT	GTG
(GGA)	 AG	985-1020	GT	GGG
(AAA)	 AG	1042-1050	GT	GGG
(GGA)	 AG	1074-1100	GT	GGG
(CGC)	 AG	1305-1356	AG	GAA
-recovered GeneMark_model.109618_t, terminal, 1305, 1356
-recovered GeneMark_model.109618_t, internal, 350, 451
-recovered GeneMark_model.109618_t, internal, 768, 821
-recovered GeneMark_model.109618_t, internal, 849, 854
-recovered GeneMark_model.109618_t, internal, 881, 928
-recovered GeneMark_model.109618_t, internal, 950, 961
-recovered GeneMark_model.109618_t, internal, 985, 1020
-recovered GeneMark_model.109618_t, internal, 1042, 1050
-recovered GeneMark_model.109618_t, internal, 1074, 1100

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2050
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support