-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1684

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 561, 569
Couldn't classify 1932, 2007
Sorry, prediction GeneMark_model.109617_t fails validation.
(AGA)	 AG	561-569	GT	GTG
(AGG)	 AG	1491-1534	GT	AAG
(ACT)	 AG	1932-2007	GT	CGG
-recovered GeneMark_model.109617_t, internal, 561, 569
-recovered GeneMark_model.109617_t, internal, 1491, 1534
-recovered GeneMark_model.109617_t, internal, 1932, 2007

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2051
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support