-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1683

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1683-snap.1-T1
Valid prediction for snap_scaffold_1683-snap.2-T1
Couldn't classify 1, 59
Sorry, prediction Augustus_model.g41786.t1 fails validation.
(CCC)	 CC	1-59	GT	CGG
(CTA)	 AG	166-378	GT	AGG
(AAA)	 AG	735-984	GT	ATG
(CTA)	 AG	1461-1633	GC	GAG
-recovered Augustus_model.g41786.t1, terminal, 1461, 1633
-recovered Augustus_model.g41786.t1, internal, 166, 378
-recovered Augustus_model.g41786.t1, internal, 735, 984
-recovered Augustus_model.g41786.t1, internal, 1461, 1633
Valid prediction for GlimmerHMM_glimmerT_62775-T1
Couldn't classify 166, 453
Sorry, prediction GeneMark_model.109615_t fails validation.
(CTA)	 AG	166-453	GT	ACG
(AAA)	 AG	735-962	GT	GGG
(GCG)	 AG	1124-1161	GT	AAG
(GAG)	 AG	1377-1395	CT	AAC
-recovered GeneMark_model.109615_t, terminal, 1377, 1395
-recovered GeneMark_model.109615_t, internal, 166, 453
-recovered GeneMark_model.109615_t, internal, 735, 962
-recovered GeneMark_model.109615_t, internal, 1124, 1161
Valid prediction for GlimmerHMM_glimmerT_62776-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 379, 500
Sorry, prediction GeneMark_model.109616_t fails validation.
(GCA)	 AG	379-500	GT	ACG
(GTT)	 AG	590-594	CT	AGC
-recovered GeneMark_model.109616_t, terminal, 590, 594
-recovered GeneMark_model.109616_t, internal, 379, 500

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2054
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support