-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1679

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 412, 423
Couldn't classify 1529, 1566
Sorry, prediction GeneMark_model.109612_t fails validation.
(GGG)	 AG	412-423	GT	GAG
(GGT)	 AG	549-626	GT	GCG
(GGG)	 AG	1293-1346	GT	GAG
(AGC)	 AG	1370-1387	GT	GAG
(AGT)	 AG	1409-1501	GT	GTG
(AGA)	 AG	1529-1566	GT	GCG
-recovered GeneMark_model.109612_t, internal, 412, 423
-recovered GeneMark_model.109612_t, internal, 549, 626
-recovered GeneMark_model.109612_t, internal, 1293, 1346
-recovered GeneMark_model.109612_t, internal, 1370, 1387
-recovered GeneMark_model.109612_t, internal, 1409, 1501
-recovered GeneMark_model.109612_t, internal, 1529, 1566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2057
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support