-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1678

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 198, 304
Couldn't classify 1774, 2002
Sorry, prediction snap_scaffold_1678-snap.1-T1 fails validation.
(TCC)	 AG	198-304	GT	CGG
(GGC)	 AG	614-675	GT	ATG
(CTA)	 AG	1774-2002	GT	CCG
-recovered snap_scaffold_1678-snap.1-T1, internal, 198, 304
-recovered snap_scaffold_1678-snap.1-T1, internal, 614, 675
-recovered snap_scaffold_1678-snap.1-T1, internal, 1774, 2002

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 472, 519
Couldn't classify 1411, 1482
Sorry, prediction GeneMark_model.109611_t fails validation.
(GGA)	 AG	472-519	GT	ACG
(AAC)	 AG	992-1057	GT	ACG
(GGG)	 AG	1213-1239	GT	GGG
(AGG)	 AG	1411-1482	GT	ATG
-recovered GeneMark_model.109611_t, internal, 472, 519
-recovered GeneMark_model.109611_t, internal, 992, 1057
-recovered GeneMark_model.109611_t, internal, 1213, 1239
-recovered GeneMark_model.109611_t, internal, 1411, 1482

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2057
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support