-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1673

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1425, 1555
Sorry, prediction GeneMark_model.109607_t fails validation.
(ATG)	 GG	1050-1324	GT	GGG
(GGG)	 AG	1425-1555	GT	ACG
-recovered GeneMark_model.109607_t, initial, 1050, 1324
-recovered GeneMark_model.109607_t, internal, 1425, 1555

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1587, 1853
Sorry, prediction Augustus_model.g41783.t1 fails validation.
(ATG)	 GC	118-243	GT	AGG
(TGT)	 AG	542-661	GT	TGG
(GTT)	 AG	1096-1216	GT	AGG
(AGT)	 AG	1587-1853	GT	GAG
-recovered Augustus_model.g41783.t1, initial, 118, 243
-recovered Augustus_model.g41783.t1, internal, 542, 661
-recovered Augustus_model.g41783.t1, internal, 1096, 1216
-recovered Augustus_model.g41783.t1, internal, 1587, 1853
Couldn't classify 115, 243
Sorry, prediction GlimmerHMM_glimmerT_62771-T1 fails validation.
(AGC)	 AG	115-243	GT	AGG
(TGT)	 AG	542-661	GT	TGG
(GTT)	 AG	1096-1216	GT	AGG
(AGT)	 AG	1587-1918	CC	GAC
-recovered GlimmerHMM_glimmerT_62771-T1, terminal, 1587, 1918
-recovered GlimmerHMM_glimmerT_62771-T1, internal, 115, 243
-recovered GlimmerHMM_glimmerT_62771-T1, internal, 542, 661
-recovered GlimmerHMM_glimmerT_62771-T1, internal, 1096, 1216
Valid prediction for GeneMark_model.109606_t
Couldn't classify 115, 243
Couldn't classify 1587, 1879
Sorry, prediction snap_scaffold_1673-snap.1-T1 fails validation.
(AGC)	 AG	115-243	GT	AGG
(TGT)	 AG	542-661	GT	TGG
(GTT)	 AG	1096-1216	GT	AGG
(AGT)	 AG	1587-1879	GT	ATG
-recovered snap_scaffold_1673-snap.1-T1, internal, 115, 243
-recovered snap_scaffold_1673-snap.1-T1, internal, 542, 661
-recovered snap_scaffold_1673-snap.1-T1, internal, 1096, 1216
-recovered snap_scaffold_1673-snap.1-T1, internal, 1587, 1879

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2067
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support