-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_167

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106812_t
Valid prediction for GlimmerHMM_glimmerT_61438-T1
Valid prediction for GeneMark_model.106808_t
Valid prediction for GeneMark_model.106810_t
Valid prediction for Augustus_model.g40858.t1
Valid prediction for snap_scaffold_167-snap.1-T1
Valid prediction for snap_scaffold_167-snap.3-T1
Valid prediction for snap_scaffold_167-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_61437-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106809_t
Couldn't classify 71, 106
Sorry, prediction GeneMark_model.106813_t fails validation.
(ATT)	 AG	71-106	GT	ATG
(GAG)	 AG	130-262	GT	CGG
(GAG)	 AG	434-597	AG	AGA
-recovered GeneMark_model.106813_t, terminal, 434, 597
-recovered GeneMark_model.106813_t, internal, 71, 106
-recovered GeneMark_model.106813_t, internal, 130, 262
Couldn't classify 2518, 2862
Sorry, prediction pasa_asmbl_17655.p1 fails validation.
(ATG)	 GG	2518-2862	CC	CTC
Valid prediction for GeneMark_model.106811_t
Valid prediction for GlimmerHMM_glimmerT_61436-T1
Valid prediction for Augustus_model.g40860.t1
Valid prediction for snap_scaffold_167-snap.2-T1
Valid prediction for snap_scaffold_167-snap.5-T1
add_exon() Sorry, snap_scaffold_167-snap.5-T1 71-597-terminal-1 is invalid.
Valid prediction for Augustus_model.g40859.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 11628
-exon list size: 47


building trellis

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-found 6 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support