-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1667

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 46, 216
Couldn't classify 949, 1061
Sorry, prediction snap_scaffold_1667-snap.1-T1 fails validation.
(GAG)	 AG	46-216	GT	TGG
(GTT)	 AG	949-1061	GT	CGG
-recovered snap_scaffold_1667-snap.1-T1, internal, 46, 216
-recovered snap_scaffold_1667-snap.1-T1, internal, 949, 1061
Valid prediction for GlimmerHMM_glimmerT_62767-T1
Couldn't classify 949, 1061
Sorry, prediction Augustus_model.g41782.t1 fails validation.
(ATG)	 TC	86-216	GT	TGG
(GTT)	 AG	949-1061	GT	CGG
-recovered Augustus_model.g41782.t1, initial, 86, 216
-recovered Augustus_model.g41782.t1, internal, 949, 1061
Couldn't classify 67, 216
Sorry, prediction GeneMark_model.109601_t fails validation.
(GCA)	 AG	67-216	GT	TGG
(GGT)	 AG	241-282	GT	GGG
(GGT)	 AG	332-430	GT	TTG
(GGG)	 AG	847-1029	GT	CAG
(ATG)	 AG	1147-1173	GT	GGG
(TGA)	 AG	1197-1205	GT	GGG
(GGG)	 AG	1245-1310	GT	GAG
(GGG)	 AG	1332-1343	GT	GGG
(TGG)	 AG	1367-1393	GT	GGG
(AGT)	 AG	1452-1460	GT	GGG
(AGA)	 AG	1482-1499	GT	AGG
(AGT)	 AG	1524-1530	AG	AAA
-recovered GeneMark_model.109601_t, initial, 1147, 1173
-recovered GeneMark_model.109601_t, terminal, 1524, 1530
-recovered GeneMark_model.109601_t, internal, 67, 216
-recovered GeneMark_model.109601_t, internal, 241, 282
-recovered GeneMark_model.109601_t, internal, 332, 430
-recovered GeneMark_model.109601_t, internal, 847, 1029
-recovered GeneMark_model.109601_t, internal, 1147, 1173
-recovered GeneMark_model.109601_t, internal, 1197, 1205
-recovered GeneMark_model.109601_t, internal, 1245, 1310
-recovered GeneMark_model.109601_t, internal, 1332, 1343
-recovered GeneMark_model.109601_t, internal, 1367, 1393
-recovered GeneMark_model.109601_t, internal, 1452, 1460
-recovered GeneMark_model.109601_t, internal, 1482, 1499

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2076
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support