-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1665

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 111
Sorry, prediction GeneMark_model.109598_t fails validation.
(CCA)	 AG	34-111	GT	ATG
(AGA)	 AG	533-598	GT	GAG
(ACA)	 AG	648-782	GT	GAG
(GGA)	 AG	819-872	GT	GGG
(AGG)	 AG	908-1345	GT	GGG
(GGA)	 AG	1374-1484	GT	AAG
(GGA)	 AG	1514-1601	GG	GAG
-recovered GeneMark_model.109598_t, terminal, 1514, 1601
-recovered GeneMark_model.109598_t, internal, 34, 111
-recovered GeneMark_model.109598_t, internal, 533, 598
-recovered GeneMark_model.109598_t, internal, 648, 782
-recovered GeneMark_model.109598_t, internal, 819, 872
-recovered GeneMark_model.109598_t, internal, 908, 1345
-recovered GeneMark_model.109598_t, internal, 1374, 1484
Valid prediction for GeneMark_model.109599_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2079
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support