-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1664

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1664-snap.1-T1
Couldn't classify 55, 69
Sorry, prediction GeneMark_model.109597_t fails validation.
(ATA)	 AG	55-69	GT	CAG
(ACT)	 AG	117-125	GT	CAG
(AGA)	 AG	229-243	GT	CAG
(ATT)	 AG	281-295	GT	GAG
(AGA)	 AG	451-504	GC	AGG
(ACT)	 AG	529-598	GT	AGG
(ACT)	 AG	623-760	CG	GAC
-recovered GeneMark_model.109597_t, terminal, 623, 760
-recovered GeneMark_model.109597_t, internal, 55, 69
-recovered GeneMark_model.109597_t, internal, 117, 125
-recovered GeneMark_model.109597_t, internal, 229, 243
-recovered GeneMark_model.109597_t, internal, 281, 295
-recovered GeneMark_model.109597_t, internal, 451, 504
-recovered GeneMark_model.109597_t, internal, 529, 598

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2079
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support