-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1663

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 211, 285
Couldn't classify 1956, 2058
Sorry, prediction snap_scaffold_1663-snap.1-T1 fails validation.
(GTA)	 AG	211-285	GT	AGG
(ATA)	 AG	1844-1890	GT	CGG
(CGG)	 AG	1956-2058	GT	TAG
-recovered snap_scaffold_1663-snap.1-T1, internal, 211, 285
-recovered snap_scaffold_1663-snap.1-T1, internal, 1844, 1890
-recovered snap_scaffold_1663-snap.1-T1, internal, 1956, 2058

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 49, 216
Couldn't classify 1710, 1888
Sorry, prediction pasa_asmbl_17647.p1 fails validation.
(GCA)	 AG	49-216	GT	AGG
(GCT)	 AG	1092-1169	GT	TGG
(GTG)	 AG	1257-1350	GT	AGG
(GTC)	 AG	1710-1888	AT	TCA
-recovered pasa_asmbl_17647.p1, internal, 49, 216
-recovered pasa_asmbl_17647.p1, internal, 1092, 1169
-recovered pasa_asmbl_17647.p1, internal, 1257, 1350
Couldn't classify 53, 216
Sorry, prediction snap_scaffold_1663-snap.2-T1 fails validation.
(ACC)	 AG	53-216	GT	AGG
(GCT)	 AG	1092-1169	GT	TGG
(GTG)	 AG	1257-1382	CA	GAC
-recovered snap_scaffold_1663-snap.2-T1, terminal, 1257, 1382
-recovered snap_scaffold_1663-snap.2-T1, internal, 53, 216
-recovered snap_scaffold_1663-snap.2-T1, internal, 1092, 1169
Valid prediction for GlimmerHMM_glimmerT_62764-T1
Couldn't classify 53, 216
Sorry, prediction GeneMark_model.109596_t fails validation.
(ACC)	 AG	53-216	GT	AGG
(ATT)	 AG	678-694	GT	GAG
(AGA)	 AG	786-794	GT	GTG
(AGA)	 AG	816-822	GT	GTG
(GCT)	 AG	1092-1169	GT	TGG
(GTG)	 AG	1257-1350	GT	AGG
(GTC)	 AG	1710-1903	CA	AAC
-recovered GeneMark_model.109596_t, terminal, 678, 694
-recovered GeneMark_model.109596_t, terminal, 1710, 1903
-recovered GeneMark_model.109596_t, internal, 53, 216
-recovered GeneMark_model.109596_t, internal, 678, 694
-recovered GeneMark_model.109596_t, internal, 786, 794
-recovered GeneMark_model.109596_t, internal, 816, 822
-recovered GeneMark_model.109596_t, internal, 1092, 1169
-recovered GeneMark_model.109596_t, internal, 1257, 1350
Couldn't classify 97, 216
Couldn't classify 1710, 1899
Sorry, prediction Augustus_model.g41780.t1 fails validation.
(GGC)	 AG	97-216	GT	AGG
(GCT)	 AG	1092-1169	GT	TGG
(GTG)	 AG	1257-1350	GT	AGG
(GTC)	 AG	1710-1899	GT	GGG
-recovered Augustus_model.g41780.t1, internal, 97, 216
-recovered Augustus_model.g41780.t1, internal, 1092, 1169
-recovered Augustus_model.g41780.t1, internal, 1257, 1350
-recovered Augustus_model.g41780.t1, internal, 1710, 1899

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2058, rend_intergenic: 699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2080
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2058, rend_intergenic: 699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support