-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1662

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1663, 1965
Sorry, prediction GlimmerHMM_glimmerT_62763-T1 fails validation.
(ATG)	 TC	215-312	GT	AGG
(CTT)	 AG	888-1025	GT	GGG
(GTA)	 AG	1663-1965	GT	AGG
-recovered GlimmerHMM_glimmerT_62763-T1, initial, 215, 312
-recovered GlimmerHMM_glimmerT_62763-T1, internal, 888, 1025
-recovered GlimmerHMM_glimmerT_62763-T1, internal, 1663, 1965
Couldn't classify 146, 312
Sorry, prediction Augustus_model.g41779.t1 fails validation.
(GAT)	 AG	146-312	GT	AGG
(CTT)	 AG	888-1025	GT	GGG
(GTA)	 AG	1663-1969	GT	GAG
-recovered Augustus_model.g41779.t1, terminal, 1663, 1969
-recovered Augustus_model.g41779.t1, internal, 146, 312
-recovered Augustus_model.g41779.t1, internal, 888, 1025
-recovered Augustus_model.g41779.t1, internal, 1663, 1969
Couldn't classify 146, 312
Couldn't classify 1663, 1965
Sorry, prediction snap_scaffold_1662-snap.1-T1 fails validation.
(GAT)	 AG	146-312	GT	AGG
(CTT)	 AG	888-1025	GT	GGG
(GTA)	 AG	1663-1965	GT	AGG
-recovered snap_scaffold_1662-snap.1-T1, internal, 146, 312
-recovered snap_scaffold_1662-snap.1-T1, internal, 888, 1025
-recovered snap_scaffold_1662-snap.1-T1, internal, 1663, 1965
Couldn't classify 146, 312
Couldn't classify 1663, 1965
Sorry, prediction GeneMark_model.109595_t fails validation.
(GAT)	 AG	146-312	GT	AGG
(CTT)	 AG	888-1025	GT	GGG
(GGT)	 AG	1383-1395	GT	GGG
(GAG)	 AG	1431-1438	GT	GGG
(GGT)	 AG	1463-1475	GT	GGG
(GAG)	 AG	1518-1531	GT	GGG
(GTA)	 AG	1663-1965	GT	AGG
-recovered GeneMark_model.109595_t, internal, 146, 312
-recovered GeneMark_model.109595_t, internal, 888, 1025
-recovered GeneMark_model.109595_t, internal, 1383, 1395
-recovered GeneMark_model.109595_t, internal, 1431, 1438
-recovered GeneMark_model.109595_t, internal, 1463, 1475
-recovered GeneMark_model.109595_t, internal, 1518, 1531
-recovered GeneMark_model.109595_t, internal, 1663, 1965

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2080
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support