-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1660

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1944, 2081
Sorry, prediction Augustus_model.g41778.t1 fails validation.
(ATG)	 GA	1255-1281	GT	CGG
(GAG)	 AG	1582-1656	GT	AGG
(GCC)	 AG	1944-2081		CA
-recovered Augustus_model.g41778.t1, initial, 1255, 1281
-recovered Augustus_model.g41778.t1, internal, 1582, 1656
Couldn't classify 1944, 2055
Sorry, prediction snap_scaffold_1660-snap.1-T1 fails validation.
(ATG)	 AG	354-392	GT	CTG
(GAG)	 AG	1582-1656	GT	AGG
(GCC)	 AG	1944-2055	GT	AGG
-recovered snap_scaffold_1660-snap.1-T1, initial, 354, 392
-recovered snap_scaffold_1660-snap.1-T1, internal, 354, 392
-recovered snap_scaffold_1660-snap.1-T1, internal, 1582, 1656
-recovered snap_scaffold_1660-snap.1-T1, internal, 1944, 2055
Couldn't classify 56, 211
Couldn't classify 1993, 2055
Sorry, prediction GeneMark_model.109594_t fails validation.
(AGA)	 AG	56-211	GT	GAG
(GAT)	 AG	338-392	GT	CTG
(GAG)	 AG	1582-1656	GT	AGG
(GAG)	 AG	1993-2055	GT	AGG
-recovered GeneMark_model.109594_t, internal, 56, 211
-recovered GeneMark_model.109594_t, internal, 338, 392
-recovered GeneMark_model.109594_t, internal, 1582, 1656
-recovered GeneMark_model.109594_t, internal, 1993, 2055
Couldn't classify 1944, 2055
Sorry, prediction GlimmerHMM_glimmerT_62762-T1 fails validation.
(ATG)	 AG	354-392	GT	CTG
(GAG)	 AG	1582-1656	GT	AGG
(GCC)	 AG	1944-2055	GT	AGG
-recovered GlimmerHMM_glimmerT_62762-T1, initial, 354, 392
-recovered GlimmerHMM_glimmerT_62762-T1, internal, 354, 392
-recovered GlimmerHMM_glimmerT_62762-T1, internal, 1582, 1656
-recovered GlimmerHMM_glimmerT_62762-T1, internal, 1944, 2055

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2081
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support