-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1658

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62761-T1
Couldn't classify 1993, 2071
Sorry, prediction GeneMark_model.109593_t fails validation.
(ATG)	 AG	245-284	GT	AGG
(CCG)	 AG	323-354	GT	TGG
(GAG)	 AG	1449-1502	GT	AGG
(AGG)	 AG	1528-1668	GT	AGG
(ACA)	 AG	1803-1882	GT	AGG
(GAG)	 AG	1993-2071	GC	AGG
-recovered GeneMark_model.109593_t, initial, 245, 284
-recovered GeneMark_model.109593_t, internal, 245, 284
-recovered GeneMark_model.109593_t, internal, 323, 354
-recovered GeneMark_model.109593_t, internal, 1449, 1502
-recovered GeneMark_model.109593_t, internal, 1528, 1668
-recovered GeneMark_model.109593_t, internal, 1803, 1882
-recovered GeneMark_model.109593_t, internal, 1993, 2071

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2086
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support