-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1657

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1358, 1423
Sorry, prediction Augustus_model.g41777.t1 fails validation.
(GAG)	 AG	1358-1423	GT	AGG
(ACT)	 AG	1698-1960	AG	AGA
-recovered Augustus_model.g41777.t1, terminal, 1698, 1960
-recovered Augustus_model.g41777.t1, internal, 1358, 1423
Couldn't classify 494, 517
Couldn't classify 1947, 2067
Sorry, prediction GeneMark_model.109592_t fails validation.
(GGA)	 AG	494-517	GT	GGG
(GGA)	 AG	545-571	GT	GGG
(GAG)	 AG	608-712	GT	AGG
(TGG)	 AG	747-796	GT	TGG
(GAG)	 AG	1358-1433	GT	ACG
(AGA)	 AG	1514-1577	GT	TTG
(GCA)	 AG	1732-1908	GT	GGG
(CTG)	 AG	1947-2067	GT	GGG
-recovered GeneMark_model.109592_t, internal, 494, 517
-recovered GeneMark_model.109592_t, internal, 545, 571
-recovered GeneMark_model.109592_t, internal, 608, 712
-recovered GeneMark_model.109592_t, internal, 747, 796
-recovered GeneMark_model.109592_t, internal, 1358, 1433
-recovered GeneMark_model.109592_t, internal, 1514, 1577
-recovered GeneMark_model.109592_t, internal, 1732, 1908
-recovered GeneMark_model.109592_t, internal, 1947, 2067

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 134, 188
Sorry, prediction GlimmerHMM_glimmerT_62760-T1 fails validation.
(GGC)	 AG	134-188	GT	GGG
(GAG)	 AG	1256-1297	GG	GAG
-recovered GlimmerHMM_glimmerT_62760-T1, terminal, 1256, 1297
-recovered GlimmerHMM_glimmerT_62760-T1, internal, 134, 188

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2086
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support