-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1656

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 222, 246
Sorry, prediction GeneMark_model.109591_t fails validation.
(GAG)	 AG	222-246	GT	CAG
(GAG)	 AG	910-915	GT	GAG
(ATG)	 AG	951-1070	GT	AGG
(GAT)	 AG	1096-1131	GT	GCG
(GGT)	 AG	1153-1167	GT	GGG
(GAA)	 AG	1192-1213	GA	GAG
add_exon() Sorry, GeneMark_model.109591_t 951-1070-initial-1 is invalid.
-recovered GeneMark_model.109591_t, initial, 951, 1070
-recovered GeneMark_model.109591_t, terminal, 1192, 1213
-recovered GeneMark_model.109591_t, internal, 222, 246
-recovered GeneMark_model.109591_t, internal, 910, 915
-recovered GeneMark_model.109591_t, internal, 951, 1070
-recovered GeneMark_model.109591_t, internal, 1096, 1131
-recovered GeneMark_model.109591_t, internal, 1153, 1167

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2088
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support