-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1654

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 45, 62
Couldn't classify 1564, 1594
Sorry, prediction GeneMark_model.109589_t fails validation.
(GGG)	 AG	45-62	GT	AAG
(AGC)	 AG	681-686	GT	TGG
(TGC)	 AG	716-735	GT	AGG
(GGC)	 AG	887-893	GT	GTG
(CGA)	 AG	915-965	GT	GAG
(TAG)	 AG	990-998	GT	GAG
(AGA)	 AG	1057-1065	GT	GAG
(AGC)	 AG	1109-1117	GT	GTG
(TGT)	 AG	1139-1153	GT	GTG
(TGT)	 AG	1197-1211	GT	GTG
(TGT)	 AG	1281-1295	GT	GTG
(AGC)	 AG	1315-1323	GT	GTG
(TGT)	 AG	1351-1365	GT	GTG
(TGT)	 AG	1393-1407	GT	GTG
(TGT)	 AG	1429-1449	GT	CAG
(TGT)	 AG	1564-1594	GT	CGG
-recovered GeneMark_model.109589_t, terminal, 45, 62
-recovered GeneMark_model.109589_t, internal, 45, 62
-recovered GeneMark_model.109589_t, internal, 681, 686
-recovered GeneMark_model.109589_t, internal, 716, 735
-recovered GeneMark_model.109589_t, internal, 887, 893
-recovered GeneMark_model.109589_t, internal, 915, 965
-recovered GeneMark_model.109589_t, internal, 990, 998
-recovered GeneMark_model.109589_t, internal, 1057, 1065
-recovered GeneMark_model.109589_t, internal, 1109, 1117
-recovered GeneMark_model.109589_t, internal, 1139, 1153
-recovered GeneMark_model.109589_t, internal, 1197, 1211
-recovered GeneMark_model.109589_t, internal, 1281, 1295
-recovered GeneMark_model.109589_t, internal, 1315, 1323
-recovered GeneMark_model.109589_t, internal, 1351, 1365
-recovered GeneMark_model.109589_t, internal, 1393, 1407
-recovered GeneMark_model.109589_t, internal, 1429, 1449
-recovered GeneMark_model.109589_t, internal, 1564, 1594

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2088
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support