-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1652

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 42, 416
Couldn't classify 1539, 1669
Sorry, prediction snap_scaffold_1652-snap.1-T1 fails validation.
(AAG)	 AG	42-416	GT	CAG
(GGT)	 AG	1539-1669	GT	GGG
-recovered snap_scaffold_1652-snap.1-T1, internal, 42, 416
-recovered snap_scaffold_1652-snap.1-T1, internal, 1539, 1669
Valid prediction for GlimmerHMM_glimmerT_62759-T1
Couldn't classify 100, 114
Sorry, prediction GeneMark_model.109586_t fails validation.
(AGA)	 AG	100-114	GT	GAG
(AGG)	 AG	138-143	GT	GGG
(AGA)	 AG	172-210	GT	AAG
(AGA)	 AG	233-437	TT	AAT
-recovered GeneMark_model.109586_t, terminal, 233, 437
-recovered GeneMark_model.109586_t, internal, 100, 114
-recovered GeneMark_model.109586_t, internal, 138, 143
-recovered GeneMark_model.109586_t, internal, 172, 210

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1186, 1223
Sorry, prediction Augustus_model.g41776.t1 fails validation.
(ATG)	 AC	27-86	GT	AGG
(GCG)	 AG	429-577	GT	AAG
(CCC)	 AG	1186-1223	GT	AGG
-recovered Augustus_model.g41776.t1, initial, 27, 86
-recovered Augustus_model.g41776.t1, internal, 429, 577
-recovered Augustus_model.g41776.t1, internal, 1186, 1223
Couldn't classify 9, 86
Sorry, prediction GeneMark_model.109587_t fails validation.
(CTC)	 AG	9-86	GT	AGG
(GCG)	 AG	429-577	GT	AAG
(GAG)	 AG	981-1043	GT	AGG
(CAA)	 AG	1067-1076	GG	GAG
-recovered GeneMark_model.109587_t, terminal, 1067, 1076
-recovered GeneMark_model.109587_t, internal, 9, 86
-recovered GeneMark_model.109587_t, internal, 429, 577
-recovered GeneMark_model.109587_t, internal, 981, 1043

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2089
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support