-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_165

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61430-T1
Valid prediction for snap_scaffold_165-snap.1-T1
Valid prediction for GeneMark_model.106802_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40854.t1
Valid prediction for snap_scaffold_165-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61432-T1
Couldn't classify 11579, 11599
Sorry, prediction GeneMark_model.106801_t fails validation.
(ATG)	 TC	10337-10339	GT	TGG
(AGA)	 AG	10385-10443	GT	GGG
(AGA)	 AG	10671-10697	GC	GAG
(AGA)	 AG	10753-11082	GT	CCG
(AGA)	 AG	11579-11599	GT	GAG
-recovered GeneMark_model.106801_t, initial, 10337, 10339
-recovered GeneMark_model.106801_t, internal, 10385, 10443
-recovered GeneMark_model.106801_t, internal, 10671, 10697
-recovered GeneMark_model.106801_t, internal, 10753, 11082
-recovered GeneMark_model.106801_t, internal, 11579, 11599
Valid prediction for GlimmerHMM_glimmerT_61431-T1
Couldn't classify 19, 95
Sorry, prediction GeneMark_model.106803_t fails validation.
(GTC)	 AG	19-95	GT	CGG
(GGG)	 AG	752-925	CG	GAC
-recovered GeneMark_model.106803_t, terminal, 752, 925
-recovered GeneMark_model.106803_t, internal, 19, 95

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 11657
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support