-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1648

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1948, 1968
Sorry, prediction GeneMark_model.109582_t fails validation.
(ATG)	 GG	426-430	GT	GTG
(GGT)	 AG	633-638	GT	GGG
(GGG)	 AG	662-694	GT	AGG
(AGA)	 AG	1327-1380	GT	GAG
(ATG)	 AG	1405-1503	GT	AGG
(AAA)	 AG	1528-1635	GT	ATG
(AGA)	 AG	1676-1705	GT	ACG
(AGA)	 AG	1948-1968	GC	GAG
-recovered GeneMark_model.109582_t, initial, 426, 430
-recovered GeneMark_model.109582_t, initial, 1405, 1503
-recovered GeneMark_model.109582_t, internal, 633, 638
-recovered GeneMark_model.109582_t, internal, 662, 694
-recovered GeneMark_model.109582_t, internal, 1327, 1380
-recovered GeneMark_model.109582_t, internal, 1405, 1503
-recovered GeneMark_model.109582_t, internal, 1528, 1635
-recovered GeneMark_model.109582_t, internal, 1676, 1705
-recovered GeneMark_model.109582_t, internal, 1948, 1968
Couldn't classify 43, 57
Sorry, prediction GeneMark_model.109583_t fails validation.
(TGG)	 AG	43-57	GT	GAG
(AGG)	 AG	85-138	GT	AGG
(AGA)	 AG	203-256	GT	GAG
(GGG)	 AG	287-295	GT	GAG
(ACA)	 AG	324-390	GA	GAG
-recovered GeneMark_model.109583_t, terminal, 324, 390
-recovered GeneMark_model.109583_t, internal, 43, 57
-recovered GeneMark_model.109583_t, internal, 85, 138
-recovered GeneMark_model.109583_t, internal, 203, 256
-recovered GeneMark_model.109583_t, internal, 287, 295

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2092
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support