-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1647

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 381, 398
Sorry, prediction GeneMark_model.109581_t fails validation.
(GGA)	 AG	381-398	GT	GGG
(GGG)	 AG	484-546	GT	GGG
(GGG)	 AG	601-648	GT	AAG
(AAT)	 AG	673-714	GT	GAG
(AGT)	 AG	738-803	GT	GAG
(AGT)	 AG	830-850	GT	GGG
(GGG)	 AG	881-934	GT	GGG
(ACT)	 AG	956-988	GT	ATG
(CCG)	 AG	1133-1229	GA	AAG
-recovered GeneMark_model.109581_t, terminal, 1133, 1229
-recovered GeneMark_model.109581_t, internal, 381, 398
-recovered GeneMark_model.109581_t, internal, 484, 546
-recovered GeneMark_model.109581_t, internal, 601, 648
-recovered GeneMark_model.109581_t, internal, 673, 714
-recovered GeneMark_model.109581_t, internal, 738, 803
-recovered GeneMark_model.109581_t, internal, 830, 850
-recovered GeneMark_model.109581_t, internal, 881, 934
-recovered GeneMark_model.109581_t, internal, 956, 988
add_exon() Sorry, GlimmerHMM_glimmerT_62758-T1 1038-1570-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 541, 713
Sorry, prediction snap_scaffold_1647-snap.1-T1 fails validation.
(GGA)	 AG	541-713	GT	AGG
(TGA)	 AG	1780-1873	TG	GAT
-recovered snap_scaffold_1647-snap.1-T1, terminal, 1780, 1873
-recovered snap_scaffold_1647-snap.1-T1, internal, 541, 713

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2092
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support