-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1646

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 160
Couldn't classify 1414, 1627
Sorry, prediction snap_scaffold_1646-snap.2-T1 fails validation.
(GCA)	 AG	41-160	GT	GGG
(GGT)	 AG	379-438	GT	ATG
(GTT)	 AG	645-657	GT	AGG
(GTT)	 AG	992-1060	GT	AGG
(CAG)	 AG	1414-1627	GT	ACG
-recovered snap_scaffold_1646-snap.2-T1, internal, 41, 160
-recovered snap_scaffold_1646-snap.2-T1, internal, 379, 438
-recovered snap_scaffold_1646-snap.2-T1, internal, 645, 657
-recovered snap_scaffold_1646-snap.2-T1, internal, 992, 1060
-recovered snap_scaffold_1646-snap.2-T1, internal, 1414, 1627

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 171, 287
Sorry, prediction GlimmerHMM_glimmerT_62757-T1 fails validation.
(TTC)	 AG	171-287	GT	AGG
(GTG)	 AG	488-670	GT	AGG
(TTC)	 AG	1051-1148	GT	TGG
(GTA)	 AG	1603-1723	GT	AGG
(AAC)	 AG	1944-2066	GG	GAG
-recovered GlimmerHMM_glimmerT_62757-T1, terminal, 1944, 2066
-recovered GlimmerHMM_glimmerT_62757-T1, internal, 171, 287
-recovered GlimmerHMM_glimmerT_62757-T1, internal, 488, 670
-recovered GlimmerHMM_glimmerT_62757-T1, internal, 1051, 1148
-recovered GlimmerHMM_glimmerT_62757-T1, internal, 1603, 1723
Couldn't classify 171, 287
Couldn't classify 1944, 2062
Sorry, prediction Augustus_model.g41775.t1 fails validation.
(TTC)	 AG	171-287	GT	AGG
(GTG)	 AG	488-670	GT	AGG
(TTC)	 AG	1051-1148	GT	TGG
(GTA)	 AG	1603-1723	GT	AGG
(AAC)	 AG	1944-2062	GT	GGG
-recovered Augustus_model.g41775.t1, internal, 171, 287
-recovered Augustus_model.g41775.t1, internal, 488, 670
-recovered Augustus_model.g41775.t1, internal, 1051, 1148
-recovered Augustus_model.g41775.t1, internal, 1603, 1723
-recovered Augustus_model.g41775.t1, internal, 1944, 2062
Couldn't classify 4, 27
Couldn't classify 1944, 2060
Sorry, prediction pasa_asmbl_17644.p1 fails validation.
(CCA)	 GT	4-27	GT	AGG
(TTC)	 AG	171-287	GT	AGG
(GTG)	 AG	488-670	GT	AGG
(TTC)	 AG	1051-1148	GT	TGG
(GTA)	 AG	1603-1723	GT	AGG
(AAC)	 AG	1944-2060	GG	TAG
-recovered pasa_asmbl_17644.p1, internal, 171, 287
-recovered pasa_asmbl_17644.p1, internal, 488, 670
-recovered pasa_asmbl_17644.p1, internal, 1051, 1148
-recovered pasa_asmbl_17644.p1, internal, 1603, 1723
Couldn't classify 171, 287
Couldn't classify 1944, 2062
Sorry, prediction GeneMark_model.109580_t fails validation.
(TTC)	 AG	171-287	GT	AGG
(GTG)	 AG	488-670	GT	AGG
(TTC)	 AG	1051-1148	GT	TGG
(GTA)	 AG	1603-1723	GT	AGG
(AAC)	 AG	1944-2062	GT	GGG
-recovered GeneMark_model.109580_t, internal, 171, 287
-recovered GeneMark_model.109580_t, internal, 488, 670
-recovered GeneMark_model.109580_t, internal, 1051, 1148
-recovered GeneMark_model.109580_t, internal, 1603, 1723
-recovered GeneMark_model.109580_t, internal, 1944, 2062
Couldn't classify 171, 287
Couldn't classify 1944, 2062
Sorry, prediction snap_scaffold_1646-snap.1-T1 fails validation.
(TTC)	 AG	171-287	GT	AGG
(GTG)	 AG	488-670	GT	AGG
(TTC)	 AG	1051-1148	GT	TGG
(GTA)	 AG	1603-1723	GT	AGG
(AAC)	 AG	1944-2062	GT	GGG
-recovered snap_scaffold_1646-snap.1-T1, internal, 171, 287
-recovered snap_scaffold_1646-snap.1-T1, internal, 488, 670
-recovered snap_scaffold_1646-snap.1-T1, internal, 1051, 1148
-recovered snap_scaffold_1646-snap.1-T1, internal, 1603, 1723
-recovered snap_scaffold_1646-snap.1-T1, internal, 1944, 2062

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1925, rend_intergenic: 41  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2095
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1925, rend_intergenic: 41  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support