-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1645

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 218
Couldn't classify 1857, 1952
Sorry, prediction pasa_asmbl_17643.p2 fails validation.
(TAC)	 AC	138-218	GT	TGG
(GTG)	 AG	1110-1283	GT	GGG
(GAG)	 AG	1857-1952	CG	ACC
-recovered pasa_asmbl_17643.p2, internal, 1110, 1283
Couldn't classify 47, 218
Couldn't classify 1857, 1970
Sorry, prediction Augustus_model.g41774.t1 fails validation.
(GAC)	 AG	47-218	GT	TGG
(GTG)	 AG	1110-1283	GT	GGG
(GAG)	 AG	1857-1970	GT	AGG
-recovered Augustus_model.g41774.t1, internal, 47, 218
-recovered Augustus_model.g41774.t1, internal, 1110, 1283
-recovered Augustus_model.g41774.t1, internal, 1857, 1970
Couldn't classify 47, 179
Sorry, prediction GeneMark_model.109577_t fails validation.
(GAC)	 AG	47-179	GT	TGG
(GGG)	 AG	600-647	TC	AAT
-recovered GeneMark_model.109577_t, terminal, 600, 647
-recovered GeneMark_model.109577_t, internal, 47, 179
Couldn't classify 1754, 1970
Sorry, prediction GeneMark_model.109579_t fails validation.
(ATG)	 TT	1155-1297	GT	GAG
(GGG)	 AG	1333-1347	GT	AGG
(TGA)	 AG	1374-1406	GT	AGG
(TTC)	 AG	1754-1970	GT	AGG
-recovered GeneMark_model.109579_t, initial, 1155, 1297
-recovered GeneMark_model.109579_t, internal, 1333, 1347
-recovered GeneMark_model.109579_t, internal, 1374, 1406
-recovered GeneMark_model.109579_t, internal, 1754, 1970
Couldn't classify 47, 218
Couldn't classify 1857, 1970
Sorry, prediction snap_scaffold_1645-snap.1-T1 fails validation.
(GAC)	 AG	47-218	GT	TGG
(GTG)	 AG	1110-1283	GT	GGG
(GAG)	 AG	1857-1970	GT	AGG
-recovered snap_scaffold_1645-snap.1-T1, internal, 47, 218
-recovered snap_scaffold_1645-snap.1-T1, internal, 1110, 1283
-recovered snap_scaffold_1645-snap.1-T1, internal, 1857, 1970
Couldn't classify 1857, 1970
Sorry, prediction GlimmerHMM_glimmerT_62756-T1 fails validation.
(ATG)	 TC	123-218	GT	TGG
(GTG)	 AG	1110-1283	GT	GGG
(GAG)	 AG	1857-1970	GT	AGG
-recovered GlimmerHMM_glimmerT_62756-T1, initial, 123, 218
-recovered GlimmerHMM_glimmerT_62756-T1, internal, 1110, 1283
-recovered GlimmerHMM_glimmerT_62756-T1, internal, 1857, 1970

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109578_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2095
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support