-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1644

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 29, 154
Sorry, prediction GeneMark_model.109575_t fails validation.
(GTC)	 AG	29-154	GT	ATG
(CTG)	 AG	278-290	GT	AGG
(AGG)	 AG	325-357	GT	GGG
(GGG)	 AG	391-450	GT	GAG
(GAG)	 AG	474-575	GT	TTG
(GAG)	 AG	593-613	GT	GGG
(GTA)	 AG	691-694	AG	AGA
-recovered GeneMark_model.109575_t, terminal, 691, 694
-recovered GeneMark_model.109575_t, internal, 29, 154
-recovered GeneMark_model.109575_t, internal, 278, 290
-recovered GeneMark_model.109575_t, internal, 325, 357
-recovered GeneMark_model.109575_t, internal, 391, 450
-recovered GeneMark_model.109575_t, internal, 474, 575
-recovered GeneMark_model.109575_t, internal, 593, 613
Couldn't classify 29, 168
Sorry, prediction snap_scaffold_1644-snap.1-T1 fails validation.
(GTC)	 AG	29-168	GT	GTG
(TCG)	 AG	959-1096	AG	AAA
-recovered snap_scaffold_1644-snap.1-T1, terminal, 959, 1096
-recovered snap_scaffold_1644-snap.1-T1, internal, 29, 168
Valid prediction for GeneMark_model.109576_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2097
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support