-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1642

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 942, 1152
Sorry, prediction snap_scaffold_1642-snap.1-T1 fails validation.
(GAC)	 AG	942-1152	GT	GGG
-recovered snap_scaffold_1642-snap.1-T1, internal, 942, 1152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 587, 647
Sorry, prediction GeneMark_model.109571_t fails validation.
(AGA)	 AG	587-647	GT	GGG
(GTA)	 AG	1028-1180	GT	TAG
(CAC)	 AG	1415-1479	GT	GGG
(GAG)	 AG	1507-1591	GT	CTG
(GCA)	 AG	1696-1734	CC	AGC
-recovered GeneMark_model.109571_t, terminal, 1696, 1734
-recovered GeneMark_model.109571_t, internal, 587, 647
-recovered GeneMark_model.109571_t, internal, 1028, 1180
-recovered GeneMark_model.109571_t, internal, 1415, 1479
-recovered GeneMark_model.109571_t, internal, 1507, 1591

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2101
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support