-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1640

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 587, 631
Couldn't classify 1621, 1671
Sorry, prediction GeneMark_model.109570_t fails validation.
(AGG)	 AG	587-631	GT	GAG
(AGG)	 AG	657-665	GT	GAG
(GGG)	 AG	687-739	GT	GAG
(AGC)	 AG	783-801	GT	ACG
(AGA)	 AG	837-998	GT	GCG
(GGG)	 AG	1374-1397	GT	GGG
(GAG)	 AG	1450-1455	GT	GGG
(GTG)	 AG	1480-1503	GT	GGG
(GGG)	 AG	1529-1555	GT	GTG
(GGT)	 AG	1579-1596	GT	GGG
(GAG)	 AG	1621-1671	GT	CGG
-recovered GeneMark_model.109570_t, internal, 587, 631
-recovered GeneMark_model.109570_t, internal, 657, 665
-recovered GeneMark_model.109570_t, internal, 687, 739
-recovered GeneMark_model.109570_t, internal, 783, 801
-recovered GeneMark_model.109570_t, internal, 837, 998
-recovered GeneMark_model.109570_t, internal, 1374, 1397
-recovered GeneMark_model.109570_t, internal, 1450, 1455
-recovered GeneMark_model.109570_t, internal, 1480, 1503
-recovered GeneMark_model.109570_t, internal, 1529, 1555
-recovered GeneMark_model.109570_t, internal, 1579, 1596
-recovered GeneMark_model.109570_t, internal, 1621, 1671

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2103
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support