-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11292, 11359
Sorry, prediction GeneMark_model.106800_t fails validation.
(ATG)	 AT	8030-8089	GT	AGG
(ACC)	 AG	11069-11121	GT	GGG
(GGT)	 AG	11144-11191	GT	GTG
(TCT)	 AG	11292-11359	GT	TGG
-recovered GeneMark_model.106800_t, initial, 8030, 8089
-recovered GeneMark_model.106800_t, internal, 11069, 11121
-recovered GeneMark_model.106800_t, internal, 11144, 11191
-recovered GeneMark_model.106800_t, internal, 11292, 11359
Valid prediction for GeneMark_model.106799_t
Valid prediction for GlimmerHMM_glimmerT_61429-T1
Valid prediction for Augustus_model.g40853.t1
Valid prediction for CodingQuarry_transcript_20110-T1
Valid prediction for snap_scaffold_164-snap.1-T1
Couldn't classify 4459, 4682
Sorry, prediction pasa_asmbl_17642.p1 fails validation.
(ATG)	 CT	3732-3792	GT	CGG
(GAA)	 AG	3905-4252	GT	AGG
(CTG)	 AG	4459-4682	TG	CCT
-recovered pasa_asmbl_17642.p1, initial, 3732, 3792
-recovered pasa_asmbl_17642.p1, internal, 3905, 4252

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 11681
-exon list size: 23


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support