-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1639

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 154, 162
Couldn't classify 581, 612
Sorry, prediction GeneMark_model.109569_t fails validation.
(GCA)	 AG	154-162	GT	AAG
(AGT)	 AG	392-493	GT	AGG
(GTT)	 AG	521-559	GT	AGG
(ACT)	 AG	581-612	GT	CAG
-recovered GeneMark_model.109569_t, internal, 154, 162
-recovered GeneMark_model.109569_t, internal, 392, 493
-recovered GeneMark_model.109569_t, internal, 521, 559
-recovered GeneMark_model.109569_t, internal, 581, 612

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2103
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support