-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1638

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1187, 1222
Couldn't classify 1458, 1496
Sorry, prediction GeneMark_model.109568_t fails validation.
(AAG)	 AG	1187-1222	GT	GGG
(GGA)	 AG	1262-1267	GT	AGG
(GGA)	 AG	1308-1337	GT	GAG
(GGT)	 AG	1369-1383	GT	GGG
(GGG)	 AG	1411-1431	GT	GAG
(AGG)	 AG	1458-1496	GT	AAG
-recovered GeneMark_model.109568_t, internal, 1187, 1222
-recovered GeneMark_model.109568_t, internal, 1262, 1267
-recovered GeneMark_model.109568_t, internal, 1308, 1337
-recovered GeneMark_model.109568_t, internal, 1369, 1383
-recovered GeneMark_model.109568_t, internal, 1411, 1431
-recovered GeneMark_model.109568_t, internal, 1458, 1496

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2103
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support