-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1636

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 13, 32
Sorry, prediction GeneMark_model.109564_t fails validation.
(GGG)	 AG	13-32	GT	CAG
(GGG)	 AG	57-224	GT	GGG
(GGA)	 AG	256-456	GC	GGG
(GGG)	 AG	567-656	GT	GAG
(ATT)	 AG	682-687	GT	AGG
(AGA)	 AG	744-864	TG	AAT
-recovered GeneMark_model.109564_t, terminal, 682, 687
-recovered GeneMark_model.109564_t, terminal, 744, 864
-recovered GeneMark_model.109564_t, internal, 13, 32
-recovered GeneMark_model.109564_t, internal, 57, 224
-recovered GeneMark_model.109564_t, internal, 256, 456
-recovered GeneMark_model.109564_t, internal, 567, 656
-recovered GeneMark_model.109564_t, internal, 682, 687
Couldn't classify 2059, 2067
Sorry, prediction GeneMark_model.109566_t fails validation.
(ATG)	 AT	1700-1716	GT	ACG
(AGG)	 AG	1789-1803	GT	GAG
(AGA)	 AG	1825-1833	GT	GTG
(AGG)	 AG	1871-1879	GT	GAG
(AGA)	 AG	1901-1915	GT	GAG
(AGA)	 AG	1941-1949	GT	GAG
(AGA)	 AG	1975-2025	GT	GAG
(AAA)	 AG	2059-2067	GT	GAG
-recovered GeneMark_model.109566_t, initial, 1700, 1716
-recovered GeneMark_model.109566_t, internal, 1789, 1803
-recovered GeneMark_model.109566_t, internal, 1825, 1833
-recovered GeneMark_model.109566_t, internal, 1871, 1879
-recovered GeneMark_model.109566_t, internal, 1901, 1915
-recovered GeneMark_model.109566_t, internal, 1941, 1949
-recovered GeneMark_model.109566_t, internal, 1975, 2025
-recovered GeneMark_model.109566_t, internal, 2059, 2067

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109565_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2109
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support