-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1635

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2042, 2081
Sorry, prediction GeneMark_model.109563_t fails validation.
(ATG)	 AG	1915-2009	GT	AGG
(ACA)	 AG	2042-2081	GT	AGG
-recovered GeneMark_model.109563_t, initial, 1915, 2009
-recovered GeneMark_model.109563_t, internal, 1915, 2009
-recovered GeneMark_model.109563_t, internal, 2042, 2081
Couldn't classify 547, 693
Couldn't classify 1595, 1669
Sorry, prediction snap_scaffold_1635-snap.1-T1 fails validation.
(ACT)	 AG	547-693	GT	CGG
(GGT)	 AG	1218-1320	GT	GGG
(ACG)	 AG	1595-1669	GT	TGG
-recovered snap_scaffold_1635-snap.1-T1, internal, 547, 693
-recovered snap_scaffold_1635-snap.1-T1, internal, 1218, 1320
-recovered snap_scaffold_1635-snap.1-T1, internal, 1595, 1669

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1502, 1564
Sorry, prediction GeneMark_model.109562_t fails validation.
(ATG)	 AG	316-332	GT	GGG
(AGA)	 AG	635-682	GT	ATG
(TAT)	 AG	1023-1196	GT	AGG
(AGA)	 AG	1232-1257	GT	CAG
(AGA)	 AG	1401-1479	GT	AGG
(TGG)	 AG	1502-1564	GT	GAG
-recovered GeneMark_model.109562_t, initial, 316, 332
-recovered GeneMark_model.109562_t, internal, 316, 332
-recovered GeneMark_model.109562_t, internal, 635, 682
-recovered GeneMark_model.109562_t, internal, 1023, 1196
-recovered GeneMark_model.109562_t, internal, 1232, 1257
-recovered GeneMark_model.109562_t, internal, 1401, 1479
-recovered GeneMark_model.109562_t, internal, 1502, 1564

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2112
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support