-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1634

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1118, 1302
Sorry, prediction snap_scaffold_1634-snap.1-T1 fails validation.
(GTA)	 AG	1118-1302	GT	CAG
-recovered snap_scaffold_1634-snap.1-T1, internal, 1118, 1302
Couldn't classify 41, 118
Couldn't classify 1099, 1304
Sorry, prediction GeneMark_model.109561_t fails validation.
(GCC)	 AG	41-118	GT	AGG
(AGA)	 AG	252-281	GT	GGG
(ATG)	 AG	304-342	GT	GAG
(AGA)	 AG	399-431	GT	CAG
(AGA)	 AG	461-652	GC	AGG
(AGA)	 AG	709-1042	GT	CAG
(AGT)	 AG	1099-1304	GT	GTG
add_exon() Sorry, GeneMark_model.109561_t 304-342-initial-1 is invalid.
-recovered GeneMark_model.109561_t, initial, 304, 342
-recovered GeneMark_model.109561_t, internal, 41, 118
-recovered GeneMark_model.109561_t, internal, 252, 281
-recovered GeneMark_model.109561_t, internal, 304, 342
-recovered GeneMark_model.109561_t, internal, 399, 431
-recovered GeneMark_model.109561_t, internal, 461, 652
-recovered GeneMark_model.109561_t, internal, 709, 1042
-recovered GeneMark_model.109561_t, internal, 1099, 1304

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62753-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2113
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support