-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1633

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 818
Couldn't classify 1511, 1702
Sorry, prediction Augustus_model.g41770.t1 fails validation.
(CTT)	 AG	39-818	GT	TGG
(GTC)	 AG	1248-1348	GT	TGG
(GTG)	 AG	1511-1702	GT	AGG
-recovered Augustus_model.g41770.t1, internal, 39, 818
-recovered Augustus_model.g41770.t1, internal, 1248, 1348
-recovered Augustus_model.g41770.t1, internal, 1511, 1702
Valid prediction for GlimmerHMM_glimmerT_62752-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62752-T1 44-1833-terminal-1 is invalid.
Couldn't classify 44, 780
Sorry, prediction GeneMark_model.109559_t fails validation.
(AGT)	 AG	44-780	GT	ACG
(AAG)	 AG	827-841	AG	AGA
-recovered GeneMark_model.109559_t, terminal, 827, 841
-recovered GeneMark_model.109559_t, internal, 44, 780
Couldn't classify 39, 908
Couldn't classify 1552, 1786
Sorry, prediction snap_scaffold_1633-snap.1-T1 fails validation.
(CTT)	 AG	39-908	GT	CCG
(GTC)	 AG	1248-1353	GT	CGG
(AGG)	 AG	1552-1786	GT	GGG
-recovered snap_scaffold_1633-snap.1-T1, internal, 39, 908
-recovered snap_scaffold_1633-snap.1-T1, internal, 1248, 1353
-recovered snap_scaffold_1633-snap.1-T1, internal, 1552, 1786

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43, 73
Sorry, prediction GeneMark_model.109560_t fails validation.
(ACT)	 AG	43-73	GT	TTG
(TCC)	 AG	260-270	GT	TGG
(GGG)	 AG	352-504	GT	AGG
(GGT)	 AG	529-591	GT	GGG
(ATG)	 AG	616-651	GT	TGG
(GAG)	 AG	800-862	GT	CCG
(GTC)	 AG	895-1060	GT	AGG
(GGC)	 AG	1098-1132	GT	GGG
(GAG)	 AG	1186-1255	GG	GAG
-recovered GeneMark_model.109560_t, initial, 616, 651
-recovered GeneMark_model.109560_t, terminal, 1186, 1255
-recovered GeneMark_model.109560_t, internal, 43, 73
-recovered GeneMark_model.109560_t, internal, 260, 270
-recovered GeneMark_model.109560_t, internal, 352, 504
-recovered GeneMark_model.109560_t, internal, 529, 591
-recovered GeneMark_model.109560_t, internal, 616, 651
-recovered GeneMark_model.109560_t, internal, 800, 862
-recovered GeneMark_model.109560_t, internal, 895, 1060
-recovered GeneMark_model.109560_t, internal, 1098, 1132

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2116
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support