-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1632

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 125, 241
Sorry, prediction GeneMark_model.109558_t fails validation.
(CGC)	 AG	125-241	GC	GAG
(CGC)	 AG	271-303	GT	GAG
(AGA)	 AG	325-339	GT	GAG
(AGA)	 AG	371-379	GT	GAG
(AGA)	 AG	408-458	GT	GAG
(GAG)	 AG	753-795	GT	GGG
(ATC)	 AG	1308-1378	GC	CAG
(AGA)	 AG	1407-1442	GC	CAG
(ATA)	 AG	1465-1468	AC	AAA
-recovered GeneMark_model.109558_t, terminal, 1465, 1468
-recovered GeneMark_model.109558_t, internal, 125, 241
-recovered GeneMark_model.109558_t, internal, 271, 303
-recovered GeneMark_model.109558_t, internal, 325, 339
-recovered GeneMark_model.109558_t, internal, 371, 379
-recovered GeneMark_model.109558_t, internal, 408, 458
-recovered GeneMark_model.109558_t, internal, 753, 795
-recovered GeneMark_model.109558_t, internal, 1308, 1378
-recovered GeneMark_model.109558_t, internal, 1407, 1442

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2116
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support